Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2178 ATGTTACAATGTGCCGTTTGTAAAGAAGCATTTGAGCTAGGCTCAAGGGCACGCGAAATGCCTTGCAAGCATATTTACCTTTCGCATTGCATTGTTCCGTGGCTTTCAACGTGCAATTCATGTCCTGTATGTCGCAACGAGTTGCCTTCGGATGGAAATCATCTGGAAAATAGAGTATCAAGGCAAATCGATGAAGAAACGTTAGGATTAACGATACGTAGACTACCAGGTAGAGGCTTAGCCGTAGGAAGGCTTCCCCACGATCACGATGACGACGAGAGTCATTGGCCGGTTGTATACACAGAAACGGATGATGCGCTCAGCGCACTTGGCATTCCGAGAAGAGTTTCCTGA 354 0.4689 MLQCAVCKEAFELGSRAREMPCKHIYLSHCIVPWLSTCNSCPVCRNELPSDGNHLENRVSRQIDEETLGLTIRRLPGRGLAVGRLPHDHDDDESHWPVVYTETDDALSALGIPRRVS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2178 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 49 - -
Lele15g2178 117 ProSiteProfiles Zinc finger RING-type profile. 4 45 IPR001841 -
Lele15g2178 117 Pfam Protein of unknown function (DUF1117) 69 117 IPR010543 -
Lele15g2178 117 Pfam Ring finger domain 3 45 IPR001841 -
Lele15g2178 117 SUPERFAMILY RING/U-box 3 51 - -
Lele15g2178 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2178 Lele-ChrLele15 15660964 15661317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2178 1 50 C3H Transcription Factor Family AT3G60080 66.000 1.98e-17 73.9