Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2118 ATGGAAGAACCATCGAAGGAGGAAGACGACGAAGAGAAGCCTACGGGTATTGAACAGAAGGAGGAATATGAGATGGTCGCGTTATCGGAAGGCATGAATCGGAATGAGAAGAGGAAGGCCCTCAAGAAACTGAAGCGGAAGCAAACGAGGAAGGAAATAGCAGCGAAGGAACGCGAGGAAGCGGAAGCTCGGCTCAACGATCCGGAGGAGCAGAAGAGAGCACTTCTGATGGATCAGGAAGAGGCCGAAAGGGTTGAGAGGGAAAGGAAGCTATTTGAGGAGAGTGAGAGGGCGTGGATCGAGACTATGGAGAAGAAGATGAAAGAGGCGGCGGAAGAAGAGCAAAGGAAGCTTCTTGAAGACGCTCATAAGCAACAGCAAGAGAAGGAGACCGAAGTGAATGAGGATGATGAATGGGAATATGTGGAGGAAGGGCCAGCTGAAATTATTTGGCAAGGGAACGAGATCATTTTTAAAAAGAAAAAAGTGAGGATTCCCAAGAAGGATTCGCGCCACCAAAATAAATGGGAGGATGCTGATAAACCTACATCAAATCCTCTACCTCCTGAATCCGAAGTTTTTGCTGATTACACGAATTCATCAGCAGCTTCTGCACAACAGGTTCTTGAGAGTGTTGCACAACAAGTGCCAAATTTTGGAACTGAACAGGATAAAGCTCATTGTCCCTTTCATTTAAAAACTGGAACATGTCGATTTGGTCAACGTTGTAGCAGAGTCCATTTTTACCCTGATAAATCAAGCACACTTCTTATGAAAAACATGTACACTGGTCCAGGCCTTTCTTGGGAGCAAGATGAGGGGCTTGAGTATACAGACGAAGAGGTGGAACGTAGTTTTGAAGAATTTTATGAGGATGTTCACACAGAGTTCCAGAAGTTTGGAGAAATTGTGAACTTTAAGTTTCTTACCTCCAGTCAACCGATCCCTTTTCTAGCATAA 960 0.45 MEEPSKEEDDEEKPTGIEQKEEYEMVALSEGMNRNEKRKALKKLKRKQTRKEIAAKEREEAEARLNDPEEQKRALLMDQEEAERVERERKLFEESERAWIETMEKKMKEAAEEEQRKLLEDAHKQQQEKETEVNEDDEWEYVEEGPAEIIWQGNEIIFKKKKVRIPKKDSRHQNKWEDADKPTSNPLPPESEVFADYTNSSAASAQQVLESVAQQVPNFGTEQDKAHCPFHLKTGTCRFGQRCSRVHFYPDKSSTLLMKNMYTGPGLSWEQDEGLEYTDEEVERSFEEFYEDVHTEFQKFGEIVNFKFLTSSQPIPFLA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2118 319 Coils Coil 37 71 - -
Lele15g2118 319 PRINTS U2 auxiliary factor small subunit signature 228 247 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele15g2118 319 PRINTS U2 auxiliary factor small subunit signature 247 267 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele15g2118 319 PRINTS U2 auxiliary factor small subunit signature 283 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele15g2118 319 MobiDBLite consensus disorder prediction 109 131 - -
Lele15g2118 319 MobiDBLite consensus disorder prediction 50 89 - -
Lele15g2118 319 MobiDBLite consensus disorder prediction 1 89 - -
Lele15g2118 319 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 208 308 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele15g2118 319 MobiDBLite consensus disorder prediction 10 37 - -
Lele15g2118 319 MobiDBLite consensus disorder prediction 109 138 - -
Lele15g2118 319 Coils Coil 100 132 - -
Lele15g2118 319 MobiDBLite consensus disorder prediction 168 190 - -
Lele15g2118 319 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Lele15g2118 319 Gene3D - 253 314 IPR012677 -
Lele15g2118 319 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2118 Lele-ChrLele15 14001603 14005670 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele15g2118 zf-CCCH 4.2e-05 CL0537