Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2117 ATGGATTCTGCCGTCCTAGCATATAACTCAATCAATGGTCGTTACTTTGCTGGAAAACAGATTAGATGTGAATTTGTGAATCTGACCAGATGGAAGGTTGCAATATGTGGGGAGTATAGGAAGTCAGGTTCCAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGAGGAGATTATGAATGGGCTGATGCTGACAAACCACCCCCAAAGTATTGGGTGAAAAAGATGGCTGCTTTATTCTGTTATTCTGATGAACATGAGAAATTGATGGAGCAAGAAGGTTTAAGTGTGCCAAAGAGCTCAAGCAAAATACCGAAAGCAGATTCAAACAGATACCGTTCAAGAAGATCAAGATCCAGAGAGATTGGTGAGTTCAATAGCAGCGGCTCTGGTAGAAGAAGAAAACGTGAAGATGAAAGAAAGTGGGGTAGAACTCACGATGAGGAAATATGTGAACAAAATACCAACTTGAAAAGCAACCATAAAGGGAAAGGTAGAACTTCTGATTCTGACTCTGATAGGGAATGGTTGGATAAGGAAGAAGATAAGGGAAAACACCATACTCGCCACAGAAAAAGTTCAATTAATAGGAACGACGGTGATGAGAGAAGAATCCACGAAGTGTATTCTGATGTGGATTCAGATTCGGCACCAGGGTACAGTAAAAAGTGCCATCGACACCATAGAAAACGCTCAATTACTAGGAACGAGGGTGATGAGAGAAGCCATGAAGGGTATTCTGATGTAGATTCAGATCCAGCTCCTGGGGACAGAAAAAAGCACCATCAACCCCATAGAAAACACTCAATTAATAGGAACGATGTTGATGAGAGAAGTAACTACGAAGGCTATTCTGGTGTAGATTCAGAAGCTGTACGTGGGGACAGGAAAAAATGGCGCAGTAGTGAAGGAAGGAGCTCAAGAAAAGGGCAGAGAAACAATGATGAGGCTGGACCTGGGGATTGGTCAGATAGGGATAGAGATTGGAAATGGCGTAGGAAAAGCAGAAGCTCTAGACGTAGGAGTAGGGACTATGGATATGCGACCGGTAGTGATACTGAATCTGGCGTGTGTTCGTTAGATAGAGATGGAGACATGCAAACCGAACTTCATTCTTCCAGGAAAAGATCCAAACACAGAAGATCTGGTTTGTGGGATGATGATTATGAAGATTATGAGAAAGACAGACAAGAACATCGTCATGACACAAGGAAGAGTTCGAAACACGAGAAGAAATCAGAGTCGGATAATGATCAAGATGAAAAGGATGTTCATTAG 1299 0.4234 MDSAVLAYNSINGRYFAGKQIRCEFVNLTRWKVAICGEYRKSGSKTCSHGTACNFIHCFRNPGGDYEWADADKPPPKYWVKKMAALFCYSDEHEKLMEQEGLSVPKSSSKIPKADSNRYRSRRSRSREIGEFNSSGSGRRRKREDERKWGRTHDEEICEQNTNLKSNHKGKGRTSDSDSDREWLDKEEDKGKHHTRHRKSSINRNDGDERRIHEVYSDVDSDSAPGYSKKCHRHHRKRSITRNEGDERSHEGYSDVDSDPAPGDRKKHHQPHRKHSINRNDVDERSNYEGYSGVDSEAVRGDRKKWRSSEGRSSRKGQRNNDEAGPGDWSDRDRDWKWRRKSRSSRRRSRDYGYATGSDTESGVCSLDRDGDMQTELHSSRKRSKHRRSGLWDDDYEDYEKDRQEHRHDTRKSSKHEKKSESDNDQDEKDVH 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2117 432 MobiDBLite consensus disorder prediction 169 194 - -
Lele15g2117 432 MobiDBLite consensus disorder prediction 387 432 - -
Lele15g2117 432 MobiDBLite consensus disorder prediction 276 338 - -
Lele15g2117 432 Gene3D - 1 42 IPR012677 -
Lele15g2117 432 MobiDBLite consensus disorder prediction 240 266 - -
Lele15g2117 432 MobiDBLite consensus disorder prediction 113 162 - -
Lele15g2117 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 31 59 IPR000571 GO:0046872
Lele15g2117 432 PRINTS U2 auxiliary factor small subunit signature 50 62 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele15g2117 432 PRINTS U2 auxiliary factor small subunit signature 12 36 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele15g2117 432 ProSiteProfiles Zinc finger C3H1-type profile. 30 60 IPR000571 GO:0046872
Lele15g2117 432 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 2 280 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele15g2117 432 MobiDBLite consensus disorder prediction 99 432 - -
Lele15g2117 432 MobiDBLite consensus disorder prediction 201 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2117 Lele-ChrLele15 13988576 14001321 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele15g2117 zf-CCCH 4.1e-06 CL0537