Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2116 ATGGCATTTATGGCTTCAAATCAGACTTCTGGTGGAAACCATGCAGGGGCAACCAATGATGATTTGTACAAGGAATTGTGGCGTGCTTGTGCTGGTCCCCTTGTCACTCTTCCTCGTGAAGGGGAGCGAGTTTACTACTTTCCACAAGGCCACATGGAACAGCTTGAGGCCTCGATGCATCAGGGGTCTGATCAGCAAATGCCTTCCTTCAATCTGCCTTCTAAGATTCTGTGTAAAGTCGTCAATGTTCATCTACGGGCTGAACCTGAAACAGATGAAGTCTATGCACAAGTAACTTTGCTCCCTGAAGCTGATCAAAGTGAAGTGACAAGCCCTGATGATCCTCTGCCAGAGCCTCCTAGGTGTGCAGTTCATTCCTTCTGCAAAACGCTTACTGCATCTGACACTAGCACTCATGGAGGTTTTTCTGTTCTTCGAAGACATGCGGATGATTGTCTGCCGCCCCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTAGTTGCAACTGATTTGCATGGAAATGAATGGCATTTTCGGCATATATTTCGAGGGCAACCTAGGCGTCACTTACTGACGACTGGATGGAGTGTGTTTGTAAGCTCCAAAAAACTGGTGGCTGGCGATGCTTTTATATTCCTAAGAGGTGAACATGGAGAGCTTCGAGTTGGAGTTAGGCGGCTCATGAGACAACAGAACAATATGCCTTCTTCTGTCATATCCAGTCACAGTATGCATATTGGTGTTCTGGCAACTGCATCTCATGCAATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGGACAAGCCGATCAGAATTCATTGTTAGTGTCAACAAGTATCTTGAAGCTCGAAGTCATAAGCTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAACTCACCTGTCTGGTCTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCATCAATTTTACGTCCTGATAGAGTCTCCCCTTGGGAATTAGAGCCACTTGTGGCCACCGCTCCTGCGAATGTTCAACCAACTCAAAGAAATAAGAGGGCTCGGCTTCCCGTTCTACCTTCAACAGTACCTGATTCTTCTCCACATGGGGCATGGAAACCATCAACTGAACCTCCATCTTTCTCCTATCGTGACTCACAACATGGACAAGATCTCTATCAATCATCTAAGTTCAATTCTACTGCAACTAACTTTCTTGGTTTTAGTGGGAACAAGTCTCTGGGGGATGCTTCCAACAATTCCATATGTTGGTCTAACAGGGTGGAGAGCTCTACAGAGCATTTTTCGCCTATTGCTCTTAAAGAATCTGGTGAAAAGAAACAAGGTACTGGAAATGGGTGTAGGCTCTTTGGGATTCAGCTACTTGAGAATTCCAATGTAGAAGAAAGTATGCCAAGAGTCGCATTGTCTGAGAGGGTGGGGGATGATAGGTCAGCTCCATGTGTAGATGTTGAGTCTGACCAGCTTTCTGAACCATCAAATGTCAATGGATCTTATATCCCATCATTGAGTTGTGATGCTGACAAATCATGTCTTCAGTCTCCTCAGGAATCACAAAGCAGGCAAATAAGGAGCTGCACTAAGGTTCACATGCAAGGAATGGCTGTTGGCAGGGCTGTGGATTTGTCACGGTTTGATGGATATGAAGATCTGCTTAAAAAATTGGAGGAAATGTTTGACATCAAGGGTGAGTTGGATAAATCCGCGAAGAAATGGCAGGTTGTCTACACTGATAATGAGGATGATATGATGATGGTTGGAGATGATCCATGGCATGAGTTCTGCACTGTGGTGAGGAAAATATTTATCTACACACCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGGCTTCCAATCAAGGAAGAAGTTAAACCTGACAAGGTAGATTCTGAAGCAGCTGTCAATAGTGATGACCAGTCATCTACTGTGGGACCTAGCTGCTAA 2031 0.449 MAFMASNQTSGGNHAGATNDDLYKELWRACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGSDQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQVTLLPEADQSEVTSPDDPLPEPPRCAVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGEHGELRVGVRRLMRQQNNMPSSVISSHSMHIGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNNSPVWSDSEWRSLKVQWDEPSSILRPDRVSPWELEPLVATAPANVQPTQRNKRARLPVLPSTVPDSSPHGAWKPSTEPPSFSYRDSQHGQDLYQSSKFNSTATNFLGFSGNKSLGDASNNSICWSNRVESSTEHFSPIALKESGEKKQGTGNGCRLFGIQLLENSNVEESMPRVALSERVGDDRSAPCVDVESDQLSEPSNVNGSYIPSLSCDADKSCLQSPQESQSRQIRSCTKVHMQGMAVGRAVDLSRFDGYEDLLKKLEEMFDIKGELDKSAKKWQVVYTDNEDDMMMVGDDPWHEFCTVVRKIFIYTPEEVKKLSPKIGLPIKEEVKPDKVDSEAAVNSDDQSSTVGPSC 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2116 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 641 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele15g2116 676 Pfam AUX/IAA family 549 642 IPR033389 -
Lele15g2116 676 ProSiteProfiles PB1 domain profile. 552 645 IPR000270 GO:0005515
Lele15g2116 676 SMART B3_2 127 229 IPR003340 GO:0003677
Lele15g2116 676 MobiDBLite consensus disorder prediction 364 408 - -
Lele15g2116 676 CDD B3_DNA 125 227 IPR003340 GO:0003677
Lele15g2116 676 Gene3D - 124 229 IPR015300 -
Lele15g2116 676 FunFam Auxin response factor 290 362 - -
Lele15g2116 676 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lele15g2116 676 SUPERFAMILY DNA-binding pseudobarrel domain 116 256 IPR015300 -
Lele15g2116 676 FunFam Auxin response factor 125 229 - -
Lele15g2116 676 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Lele15g2116 676 SUPERFAMILY CAD & PB1 domains 554 629 - -
Lele15g2116 676 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele15g2116 676 Gene3D - 547 641 - -
Lele15g2116 676 Gene3D - 290 363 - -
Lele15g2116 676 MobiDBLite consensus disorder prediction 655 676 - -
Lele15g2116 676 FunFam Auxin response factor 547 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2116 Lele-ChrLele15 13979475 13985920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2116 4 675 B3 DNA Binding Superfamily AT1G59750 69.630 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele15g2116 AUX_IAA 7e-12 CL0072