Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2098 ATGGAAGGCTTATCAAGTCCTATACCTCGAACAGTAGAGGAGGTTTTTAGCGACTTTAAGGGCAGAAGAGCTGGAATGATTAGAGCCCTTACTACGGATGTTGAAAAGTTCTACCAGCAGTGCGACCCAGAGAAGGAGAACTTGTGTCTATATGGATTTCCCACTGAAACATGGCAAGTGAATTTGCCAGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCTCTAGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGTTATCACTTGTTGCAGTTCACAGTGATGCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCTCGGTTTGGCTTTGGTAAGAATGAGAGGAAAAGGCTTTTTCAAATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACCGGAAGTGCCAACCAATCGAAGGATCAATCAGCTGCTCATACCAATGGTAGCAAAAGCAAATCAAGTGGGAAGTCCCGCCGATCTGAGTCACAGGCCAAGGGAGTGAATATGTCACCACCATCCAAAGAAGATGATGAGAGTGGAGGAGAAGATGAAGACGATGAACAAGGCGCAACATGTGGAGCATGTGGTGATAGCTATGCCAATGATGAATTCTGGATCTGTTGTGACGTGTGTGAGAGATGGTTCCATGGCAAATGTGTCAAAATTACTCCTGCTAAGGCTGAGCACATTAAGCAATACAAGTGCCCAAGCTGCAGCAACAAAAGGGCTAGAGTCTAG 756 0.455 MEGLSSPIPRTVEEVFSDFKGRRAGMIRALTTDVEKFYQQCDPEKENLCLYGFPTETWQVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSANQSKDQSAAHTNGSKSKSSGKSRRSESQAKGVNMSPPSKEDDESGGEDEDDEQGATCGACGDSYANDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2098 251 FunFam PHD finger alfin-like protein 190 246 - -
Lele15g2098 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Lele15g2098 251 CDD PHD_AL_plant 198 247 IPR044104 -
Lele15g2098 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lele15g2098 251 MobiDBLite consensus disorder prediction 141 193 - -
Lele15g2098 251 SMART PHD_3 197 245 IPR001965 -
Lele15g2098 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Lele15g2098 251 MobiDBLite consensus disorder prediction 141 159 - -
Lele15g2098 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Lele15g2098 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Lele15g2098 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0006355|GO:0042393
Lele15g2098 251 Pfam PHD-finger 198 247 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2098 Lele-ChrLele15 13709362 13713954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2098 1 248 Alfin-like Transcription Factor Family AT1G14510 79.839 2.17e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele15g2098 Alfin 3.8e-69 No_clan