Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2057 ATGCAAGCCATGGCTTCTCATTCTCATCCTTCCGGTTCTATCCATTTCTTCAAAATCATCTTGAAATCCAATCTTGAAGCCATTAGGATTCCAAACAAATTTACAGCAAGATATGCAACTGGTTTGTCAAACCCAGTGTTTCTGAAGTCTCCTGATGGGAAAGAGTGGAAAGTGTATCAGACAAAACATGATAATGGGGTTTGGTTTCAAAAGGGGTGGAAGGAATTTGCTCGCTTTTACTCTCTAGATGAAGGGCATTTGATTTTGTTCAAGTATGACGGAACTTCTCGGTTTGACGTATGCTTATTTGATAAGAGTACACTAGAAATAGACTATCCTTCTTCATCAAAGAATAATCTTAGTGATGATACAGTTGAAATCTTGGATGAGATGCCTCCGAACCGAAGGGCTATGAAAAGAACAACTTTGTCATCTTCTAGGCCTCATAAGAAATTGAGAAAGTTTCAGAAATCAACCAATGCAGAATTGAAATTTCCTAAGAAGGAACCAGAAGAAGACATGGGAGCGAGAATTTTTACCAAGAGTGAATGCTTGAATTCTGAGCATAGAAGGAAGAAAGCATTAACTACTGTGGAAAAGATCAGAGCTATAAACAGTGAGAGTTCTTTCAAATCGGAAAATCCCTTTTTTATGGTGATGCCAATGAAATTCGCTAAAAGACATTTGGAGAAAGAGTGTGGTGTTGTGAAACTGGAGGCCTTGGATGGGAGAACTTGGCCTGCTAGGTATAATATTCCCAGAATCAAAGATGGATGGGAGAAGTTTGTAATGGAAAATGATTTAAAAGTGGGTCAAGTTTGTGTTTTTGAAATGATTGATGGCTTGTTCAAAGTACATATTTTCGGAGACAAGAAAAAAGTTAAAAAAAGAAAGAGGGCTAAAAAGGAGCAGATCAGCAGCATGCAACAGAGTTCTAATGAAAAGGCTAGCTCTTTCAAATCTGAAAATCCTCATTTTATGGTCAAGATGAAACATGCTTACATTGATGGCAGATCAAACTTGCATGTGCCATCACAATTTGCAAGAACACATCTTGATGACTGTACTGAGAGTCTCAAACTCGTAAGAAGTCCTTACTAA 1101 0.3778 MQAMASHSHPSGSIHFFKIILKSNLEAIRIPNKFTARYATGLSNPVFLKSPDGKEWKVYQTKHDNGVWFQKGWKEFARFYSLDEGHLILFKYDGTSRFDVCLFDKSTLEIDYPSSSKNNLSDDTVEILDEMPPNRRAMKRTTLSSSRPHKKLRKFQKSTNAELKFPKKEPEEDMGARIFTKSECLNSEHRRKKALTTVEKIRAINSESSFKSENPFFMVMPMKFAKRHLEKECGVVKLEALDGRTWPARYNIPRIKDGWEKFVMENDLKVGQVCVFEMIDGLFKVHIFGDKKKVKKRKRAKKEQISSMQQSSNEKASSFKSENPHFMVKMKHAYIDGRSNLHVPSQFARTHLDDCTESLKLVRSPY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2057 366 Coils Coil 291 311 - -
Lele15g2057 366 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lele15g2057 366 SUPERFAMILY DNA-binding pseudobarrel domain 212 289 IPR015300 -
Lele15g2057 366 SUPERFAMILY DNA-binding pseudobarrel domain 12 113 IPR015300 -
Lele15g2057 366 MobiDBLite consensus disorder prediction 305 320 - -
Lele15g2057 366 MobiDBLite consensus disorder prediction 298 321 - -
Lele15g2057 366 Gene3D - 305 365 IPR015300 -
Lele15g2057 366 Gene3D - 194 292 IPR015300 -
Lele15g2057 366 SMART B3_2 16 106 IPR003340 GO:0003677
Lele15g2057 366 SMART B3_2 201 291 IPR003340 GO:0003677
Lele15g2057 366 Pfam B3 DNA binding domain 217 288 IPR003340 GO:0003677
Lele15g2057 366 Pfam B3 DNA binding domain 23 105 IPR003340 GO:0003677
Lele15g2057 366 ProSiteProfiles B3 DNA-binding domain profile. 203 291 IPR003340 GO:0003677
Lele15g2057 366 CDD B3_DNA 216 288 IPR003340 GO:0003677
Lele15g2057 366 PANTHER B3 DOMAIN-CONTAINING 207 322 - -
Lele15g2057 366 Gene3D - 10 107 IPR015300 -
Lele15g2057 366 CDD B3_DNA 15 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2057 Lele-ChrLele15 13242661 13247808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2057 16 288 B3 DNA Binding Superfamily AT3G18990 30.816 1.17e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele15g2057 B3 1.8e-13 CL0405