Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2028 ATGTCATTCCGGAGTATAGTTCGTGATTTGACAGATAGCTTAGGGAGCTTATCTAGACGGAGTTTTGATGTGCGGCTGACTGGCTATCACAGAGGAAAATCTCATGGTGCCATACATGATCAGCCAGAAGTAATTGAAAATAGTTGCTGGGCTAGCTTGCCCCCAGAATTGTTGTATGATATCATTAGAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTATGCCAGTCTTGGAGGACTATGTGCAAAGAAATTGTTAAGAGTCCAGAGTTTAGTGGAAAGCTTACTTTCCCTGTGTCCTTGAAGCAGCCAGGATCACGAGACGGAACCATTCAATGTTTCATCAAAAGAGATAAATCTAATTTATCATATCGACTTTTCCTTTGTCTCAGCCCTACTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTACATAGAGTATATTATTTCCATGGACGCCGGCAATATCTCTAGATCGAGTAGCTCTTACATTGGAAAGCTGAGATCAAACTTGCTGGGTACCAAATTTATAATATACGATACACAGCCTCCATGCAATTCTGCCCATATACTGCCTCCAGGGAGGACTAGCCGAAGGTTTTATTCGAAAAAGGTTTCACCAAAGGTCCCATCTGGGAGTTACAACATTGCTCAAGTAACATATGAATTAAATGTGCTCGGAACACGAGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAGCATCAGCACTTGACGCTGGTGGCGCAGTCCCTGGCCAACCCGAGCTTCTTCCCCATCCCCTGGATGACTCATTCCGGAGCATCTCCTTTTCAAAATCCTTAGACCGCTCTATCGAGTTCAGCAGCTCAAGATTTTCCGAGTTCAGGGAAGGCTGCAACGAGGATGAGGACGGCAAACTGAGGCCCTTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAATGCTGGTGCCTTAACTTCCGAGGCCGGGTAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCTGCCCAGCCAGCAGCCAGTTCTTCTACCCTGTCTCATCCAGCGCCGTCCGAGCAAGATAAGATAATCTTGCAGTTTGGTAAAGTTGGGAAAGATATGTTTACCATGGATTATGGTTATCCTCTATCGGCATTCCAGGCTTTCGCGATATGCTTGAGTAGCTTCGGCACCAAATTGGCATGTGAATAA 1269 0.4476 MSFRSIVRDLTDSLGSLSRRSFDVRLTGYHRGKSHGAIHDQPEVIENSCWASLPPELLYDIIRRLEESESTWPARKHVVACAAVCQSWRTMCKEIVKSPEFSGKLTFPVSLKQPGSRDGTIQCFIKRDKSNLSYRLFLCLSPTLLVENGKFLLSAKRTRRTTYIEYIISMDAGNISRSSSSYIGKLRSNLLGTKFIIYDTQPPCNSAHILPPGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGAVPGQPELLPHPLDDSFRSISFSKSLDRSIEFSSSRFSEFREGCNEDEDGKLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAASSSTLSHPAPSEQDKIILQFGKVGKDMFTMDYGYPLSAFQAFAICLSSFGTKLACE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2028 422 SUPERFAMILY F-box domain 44 94 IPR036047 GO:0005515
Lele15g2028 422 PANTHER TUBBY-RELATED 44 420 - -
Lele15g2028 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Lele15g2028 422 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Lele15g2028 422 Gene3D - 43 98 - -
Lele15g2028 422 Pfam F-box domain 50 97 IPR001810 GO:0005515
Lele15g2028 422 Pfam Tub family 111 417 IPR000007 -
Lele15g2028 422 Gene3D Tubby Protein; Chain A 109 416 IPR025659 -
Lele15g2028 422 FunFam Tubby-like F-box protein 45 98 - -
Lele15g2028 422 SUPERFAMILY Tubby C-terminal domain-like 99 422 IPR025659 -
Lele15g2028 422 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Lele15g2028 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Lele15g2028 422 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Lele15g2028 422 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Lele15g2028 422 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Lele15g2028 422 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Lele15g2028 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2028 Lele-ChrLele15 12939218 12942310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2028 1 422 TUB Transcription Factor Family AT1G76900 67.102 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele15g2028 Tub 5.2e-113 CL0395