Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1962 ATGTTTATACTGGAGCTAACTTTGCGTTCTTGGAATCACACTGAAGAGAATAAGAGGAGAACACTTCAGAAGAACGATATTGCAGCAGCAATCACAAGGACTGATATATTTGATTTCTTGGTGGATATTGTTCCGCGTGAGGATTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGGACAATGCCCGTGGCAGGGCTTGATGATGCAATTCCTTATTGTTACGTGCCACCTCAGCATGCACCGCAAGTAGGCAAGGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCGACCATGTATGCCCAACAGTCTCATCCGTTTATGGCCTTCCTGGAACCCCTATGA 348 0.4626 MFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGLDDAIPYCYVPPQHAPQVGKAGVIMGKPVMDPTMYAQQSHPFMAFLEPL 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1962 115 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 63 - -
Lele15g1962 115 SUPERFAMILY Histone-fold 1 46 IPR009072 GO:0046982
Lele15g1962 115 Gene3D Histone, subunit A 1 46 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1962 Lele-ChrLele15 12344170 12344517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1962 1 94 CCAAT-HAP5 Transcription Factor Family AT1G08970 75.532 1.01e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele15g1962 None None None