Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1956 ATGCCTTGTCTGATGAGTACAATTGAAATCAAAGGAGCTTCCCTGCATCTTAGCTATCATAATCTGCGGTACCTGAAGTTCCAGATAAGTGGAATCATTTTTAGATATCTTATTGATGATGCACATGTTGCAGTAAAAAGAATGTTTGAAATGTCAGAATTGGATGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTGAAGGATGCATTTGAAAAGTTCGGCAAACTTATTGAGGCTAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATCACTGTTGATAAAGCTCAGCCTCAACAAGGATCTACTAGAGATGATGGTGATCGTTACCGTGAAAGGGGTCGCGATCGTGACCGAGATTATAGAGGTGGTCGAAGCTCCAATGGTGGCGAATGTTTTAAATGTGGAAAGTAG 525 0.4114 MPCLMSTIEIKGASLHLSYHNLRYLKFQISGIIFRYLIDDAHVAVKRMFEMSELDEYRCFIGGLAWSTSDRKLKDAFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEAMNGMDLDGRTITVDKAQPQQGSTRDDGDRYRERGRDRDRDYRGGRSSNGGECFKCGK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1956 174 MobiDBLite consensus disorder prediction 133 174 - -
Lele15g1956 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Lele15g1956 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 129 IPR000504 GO:0003723
Lele15g1956 174 Gene3D - 45 169 IPR012677 -
Lele15g1956 174 SUPERFAMILY RNA-binding domain, RBD 49 167 IPR035979 GO:0003676
Lele15g1956 174 MobiDBLite consensus disorder prediction 138 162 - -
Lele15g1956 174 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 51 174 - -
Lele15g1956 174 SMART rrm1_1 58 131 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1956 Lele-ChrLele15 12290563 12292838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1956 37 161 Eukaryotic Initiation Factors Gene Family AT1G34140 32.558 3.82e-12 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0517 13 17358034 17361133 Lele15g1956 15 12290563 12292838 hybridization
Lele14g0440 14 16055783 16056669 Lele15g1956 15 12290563 12292838 hybridization