Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1947 ATGGACAGAGTGGTTTCGCCTTTCACGGGTGCTTTACTCCTTTGTGCAATTTTAGTGTTCGATTTGGTGCTAAATGTTTCTGGTAATGCCGAAGGTGATGCCCTCAATGCATTTAAGATCAGCGTAACTGATCCAAACAATGTTCTTCAAAGCTGGGATTCTACCCTTGTCAATCCTTGCACGTGGTTTCATGTTACATGCGATACTGATAATAGAGTGACCCGTGTTGATCTTGGAAATGCCAACCTTGCGGGTGAACTAGTTGCACAGCTTGGTCTACTCCCAAATTTGCAGTACTTGGAGCTTTATAGTAATAATATAACTGGAAAAATCCCAGCTGAATTTGGAAATTTGACAAGGTTGGTGAGCTTGGATCTGTACGCTAATCGCATATCTGGTAGCATCCCAAAAACATTGGGCAATCTTCAAGAACTACGTTTCCTGCGTCTCAACAATAACACCTTAACTGGAGTCATTCCCATGTCCTTGACTAATGTCTATTCGCTGCAAGTCCTTGATCTTTCAAAAAACCAGCTACAAGGAGACATCCCAACCAGTGGTTCATTTATATCGTTTACTCAACTCAGTTTTAACGAAAATCCTCTTTTGAAACCACTAAACATTACACCTAGACCAATTTCACCAACGCCTCCGCCATCTCCTTCAGGAAATAGTGCTACTGGAGCTATTGCCGGAGGAGTTGCTGCTGCTGCTGCTCTGATGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGCCGGAAGAGGAGACCACAAGATTATTTCTTTGATGTCCCTGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGTGAGCTGCAAGTTGCAACCGACAACTTTAGTAACAAAAACATTCTGGGTAGAGGTGGATTTGGTAAGGTTTACAAAGGACGGTTAACTGATGGGTCTCTAGTTGCAGTGAAAAGACTTAAAGAGGAACGCACTCAAGGTGGAGAGCTGCAATTTCAAACAGAAGTAGAAATGATCAGCTTGGCTGTCCATCGTAATTTGCTGCGGCTGCGTGGTTTTTGCATGACACCAACTGAACGGTTGCTTGTGTATCCTTACATGGCTAATGGTAGTGTGGCATCGTGTTTACGAGACCGCCCGGATACAAAACCCCCACTTGAATGGCCTATACGGAAGCGAATTGCACTGGGAGCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGATCCAAAGATCATTCACCGTGATGTTAAAGCTGCTAATATATTATTGGATGAGGAATATGAAGCAGTTGTTGGGGACTTTGGCTTGGCAAAACTCATGGATTACAAAGACACTCATGTTACCACTGCGGTGCGTGGTACAATCGGGCACATTGCACCAGAATACCTCTCCACTGGAAAGTCTTCAGAGAAGACAGATGTTTTTGGTTATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTTGCTCGACTCGCCAATGATGATGATGTCATGTTACTTGATTGGGTGAAAGGGCTCTTGAAAGACAAGAGATTGGAAACCCTAGTGGATGCTGATTTGCAGGGTGAATATAATGAAGAGGAGGTAGAGCAACTAATCCAAGTGGCCTTGCTCTGCACACAAAGCTCTGCTATGGAAAGACCAAAGATGTCTGAGGTGGTAAGGATGCTTGAAGGTGATGGTTTGGCTGAAAAATGGGATCAATGGCAGAAAGACGAGATGTATCGGCGAGATAATCAAACCCTTCTCCCTAATCCTAATTGGCCGATCGTCGACTCGGCTTCTCATATCCCCCCAGATGAACTCTCAGGCCCCAGATGA 1848 0.4475 MDRVVSPFTGALLLCAILVFDLVLNVSGNAEGDALNAFKISVTDPNNVLQSWDSTLVNPCTWFHVTCDTDNRVTRVDLGNANLAGELVAQLGLLPNLQYLELYSNNITGKIPAEFGNLTRLVSLDLYANRISGSIPKTLGNLQELRFLRLNNNTLTGVIPMSLTNVYSLQVLDLSKNQLQGDIPTSGSFISFTQLSFNENPLLKPLNITPRPISPTPPPSPSGNSATGAIAGGVAAAAALMFAAPAIALAYCRKRRPQDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDNFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRDRPDTKPPLEWPIRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDADLQGEYNEEEVEQLIQVALLCTQSSAMERPKMSEVVRMLEGDGLAEKWDQWQKDEMYRRDNQTLLPNPNWPIVDSASHIPPDELSGPR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1947 615 SMART LRR_typ_2 118 141 IPR003591 -
Lele15g1947 615 SMART LRR_typ_2 94 117 IPR003591 -
Lele15g1947 615 SMART LRR_typ_2 142 165 IPR003591 -
Lele15g1947 615 SMART LRR_typ_2 166 191 IPR003591 -
Lele15g1947 615 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Lele15g1947 615 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Lele15g1947 615 MobiDBLite consensus disorder prediction 595 615 - -
Lele15g1947 615 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Lele15g1947 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Lele15g1947 615 SUPERFAMILY Protein kinase-like (PK-like) 272 567 IPR011009 -
Lele15g1947 615 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 576 - -
Lele15g1947 615 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g1947 615 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Lele15g1947 615 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Lele15g1947 615 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Lele15g1947 615 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Lele15g1947 615 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Lele15g1947 615 FunFam Somatic embryogenesis receptor-like kinase 1 369 586 - -
Lele15g1947 615 SUPERFAMILY L domain-like 31 214 - -
Lele15g1947 615 ProSiteProfiles Protein kinase domain profile. 292 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g1947 615 FunFam Somatic embryogenesis receptor kinase 1 27 215 - -
Lele15g1947 615 Pfam Protein kinase domain 293 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1947 Lele-ChrLele15 12179883 12188796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1947 17 615 Receptor kinase-like Gene Family AT4G33430 73.806 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele15g1947 Pkinase 1.1e-44 CL0016