Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1942 ATGGCATTCCCCGGGGACTGCCACAAGAACAAGAAGCACTGTGATCCCACAAGAGCTAAACGAAGTACTATTCCAACTCAGACAGGAGCTCTTCAGAAACTCAACCATTTGGACTTGTCTTACAACAATCTTATTGGTGCCATTCCAACTCAGATAGGAGCTCTTCAGAATCTCAACCATTTGAGCTTGTCTAACAATAATCTTACCGGTACTATTCCAACTCAGACAGGAGCTCTTCAGAAACTCAACCATTTGGACTTGTCTTACAACAATCTTATTGGTGCCATTCCAACTCAGATAGGAGCTCTTCAGAATCTCAACCATTTGAGCTTGTCTAACAATAATCTTACCGGTACTATTCCAACTCAGACAGGAGCTCTTCAGAAACTCAACCATTTGGACTTGTCTTCCAATAATCTTATTGGTATCATTCCAACTCAAATAGGAACTCTTCCAAATCTCATATATTGGAGCTTTTCTTATAACAATCTTACTGCCGCTGCCATTATAGCAGAGGAGAAACATGCTCTCCTTCATACAAAATGGTGGAATATTAGCAACAGTACGTACAACTTCTCAGACCCTTGTGAATGGGCAGAGATATATTGCAATGAAATTGGAAGAGTTATTAAGATGAGTCCACTAAGGATCACTTCACAACACCCTCGTCTAGCGAATCTCAACCTCACCGCATTTCCCTATCTAACAAGTCTCATACTTTCTAGAATGGGTTTGATAGGTACTATTCTAACTCATATAGGAGCTCTTCAGAATCTCACTTATTTGGACTTGTCTCATAATAACCTCACTGGTGATATCCCTCCTTCCATTTTCAATTTGACAAATTTACAACACTTTGATGTTTCTCAAAATCATTTAAGTGGAAGCATACCAGAAGTGATTGGACGGCCTTTTTATTATTTTTATAATATAAACATCTCCCAAAATAATCTGAGTGGAAACGTTCCCTACATTTTGAATGGCGATTATTTTGATTTTCATGGTGACTTCAGTCACAACAAATTCAATGAAACATTACCATCTGATATATGCATTTTACCTTCACGATGTAACATTGATTTGAGCTACAATAATATCTCTGGAAGTATACATAGAGAACTTGGTAGGCTGGAGTCCATCAACTTGTCTTACAATCATCTCAGTGGCTATGTTCCAATTGAAGTTTATACCTCTTTTCCTCGTGACATTTTATATGGCAATAAAGAATTACTGGGTTCAAAGAAGATGCATGATTCTTCATATTTGATGAAAATCATTATCCCTTTGACAATTTTTCTTGTCATCATGTTTGTTGCGGAGCTTGCATACACGCTAGTTGTGACTGAAAAGTGCGATGTTTATAGTTTTGGAGTGGTGACACTGGAAACATTGATGGGAAGACATCCTGGAGATTTGATATTATCTTTGTCAAAGACCTGTACTAAAAGTATTTTGCTAAAAGATATCTTAGACACACGTCTTCCATTGCCAGAACAGAGAGATGCAGGAGATGTGACAGTTTTGGTGACAATAGCATTAGCATGCTTGAATCCATCTCCCAAATCTCGACCATCAATGCAACAAGTGTCCCAAAGGCTTTTATCCTCCAACCTGCCATTAGCCATTCCTTTCAATAATATCTCACTCCAGCATTTAGTGAATCAAGATATGCAAATAAGCTAA 1683 0.3803 MAFPGDCHKNKKHCDPTRAKRSTIPTQTGALQKLNHLDLSYNNLIGAIPTQIGALQNLNHLSLSNNNLTGTIPTQTGALQKLNHLDLSYNNLIGAIPTQIGALQNLNHLSLSNNNLTGTIPTQTGALQKLNHLDLSSNNLIGIIPTQIGTLPNLIYWSFSYNNLTAAAIIAEEKHALLHTKWWNISNSTYNFSDPCEWAEIYCNEIGRVIKMSPLRITSQHPRLANLNLTAFPYLTSLILSRMGLIGTILTHIGALQNLTYLDLSHNNLTGDIPPSIFNLTNLQHFDVSQNHLSGSIPEVIGRPFYYFYNINISQNNLSGNVPYILNGDYFDFHGDFSHNKFNETLPSDICILPSRCNIDLSYNNISGSIHRELGRLESINLSYNHLSGYVPIEVYTSFPRDILYGNKELLGSKKMHDSSYLMKIIIPLTIFLVIMFVAELAYTLVVTEKCDVYSFGVVTLETLMGRHPGDLILSLSKTCTKSILLKDILDTRLPLPEQRDAGDVTVLVTIALACLNPSPKSRPSMQQVSQRLLSSNLPLAIPFNNISLQHLVNQDMQIS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1942 560 Gene3D Ribonuclease Inhibitor 121 169 IPR032675 -
Lele15g1942 560 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 21 173 - -
Lele15g1942 560 Gene3D Ribonuclease Inhibitor 10 120 IPR032675 -
Lele15g1942 560 MobiDBLite consensus disorder prediction 1 23 - -
Lele15g1942 560 PRINTS Leucine-rich repeat signature 256 269 - -
Lele15g1942 560 PRINTS Leucine-rich repeat signature 130 143 - -
Lele15g1942 560 Pfam Protein tyrosine and serine/threonine kinase 440 533 IPR001245 GO:0004672|GO:0006468
Lele15g1942 560 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 23 165 - -
Lele15g1942 560 SMART LRR_sd22_2 31 60 - -
Lele15g1942 560 SMART LRR_sd22_2 127 153 - -
Lele15g1942 560 SMART LRR_sd22_2 79 108 - -
Lele15g1942 560 SMART LRR_sd22_2 256 282 - -
Lele15g1942 560 Pfam Leucine Rich Repeat 129 146 IPR001611 GO:0005515
Lele15g1942 560 MobiDBLite consensus disorder prediction 1 19 - -
Lele15g1942 560 Gene3D Transferase(Phosphotransferase) domain 1 430 541 - -
Lele15g1942 560 SUPERFAMILY Protein kinase-like (PK-like) 440 540 IPR011009 -
Lele15g1942 560 Pfam Leucine rich repeat 33 92 IPR001611 GO:0005515
Lele15g1942 560 SUPERFAMILY L domain-like 311 393 - -
Lele15g1942 560 SUPERFAMILY RNI-like 23 323 - -
Lele15g1942 560 Pfam Leucine Rich repeats (2 copies) 257 298 IPR025875 -
Lele15g1942 560 FunFam Nuclear pore complex protein NUP107 174 324 - -
Lele15g1942 560 SMART LRR_typ_2 127 151 IPR003591 -
Lele15g1942 560 SMART LRR_typ_2 103 126 IPR003591 -
Lele15g1942 560 SMART LRR_typ_2 374 406 IPR003591 -
Lele15g1942 560 SMART LRR_typ_2 256 280 IPR003591 -
Lele15g1942 560 SMART LRR_typ_2 55 79 IPR003591 -
Lele15g1942 560 SMART LRR_typ_2 31 54 IPR003591 -
Lele15g1942 560 Gene3D Ribonuclease Inhibitor 170 331 IPR032675 -
Lele15g1942 560 Gene3D Ribonuclease Inhibitor 333 419 IPR032675 -
Lele15g1942 560 ProSiteProfiles Leucine-rich repeat profile. 258 280 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1942 Lele-ChrLele15 12146153 12154472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1942 31 408 Receptor kinase-like Gene Family AT5G56040 33.673 5.20e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele15g1942 PK_Tyr_Ser-Thr 1.5e-05 CL0016