Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1940 ATGGGCTTGATAGGTACCATTCCAATTCAGATAAGAGCTCCTCAGAAACTCATCTACTTGAACTTATCTTACAACAATCTTATTGGTATGGTTTCAACTCAAATAGGAGCTCTTCAGAATCTCACTTATTTGGACTTGTCTCATAATAATCTTACCGGTGATATCCCTACTTCCATTTTCAATTTGACAAATTTACAACACTTTGATGTTTCTGAAAATCATTTAAGTGGAAGCATGCCAGAAAAGATTGGACCTCTTCATTATTCATATCGTATAAACATCTCCCAAAATAATCTAAGTGGAAACTTGCCTTACGTTTTGAATGACGATTACTTTCATTTTGATGGTGACTTTAGTCACAACAAATTCAATGGAACATTACCATCAGACATATGCATTTTACCTTCACGATGTAACATTGATTTGAGCTACAATAATATCTCTGGAAGTATACCTAGAGAACTAGTTGGTACTTATGGTTATATTGCTCCAGAGCTTGCATACACACTAGTTGTGACTGAAAAGTGCGATGTTTATAGTTTTGGAGTGGTGACACTAGAAACAATGATGGGAAGACATCCTGGAGATCTGATATCATCTCTGTCAAAGACTTGTAATGAAATTATTTTGCTAAAAGATGTCTTAGACGCACGTCTTCCATTGCCAGAACGGAGAGATGCAGGAGATGTGATAGTTTTAGTGACAATAGCATTAGCATGCTTAAATCCATCTCCCAAATCTCGACCATCAATGCAACAAGTGTCCCAAAAGCTTGTATCCTCCAACCTTCCATTAGCCATTCCTTTCAATAATATCTCACTCCAACATCTAGTGAATCAAGATATGCAAATAAGCTAA 858 0.3625 MGLIGTIPIQIRAPQKLIYLNLSYNNLIGMVSTQIGALQNLTYLDLSHNNLTGDIPTSIFNLTNLQHFDVSENHLSGSMPEKIGPLHYSYRINISQNNLSGNLPYVLNDDYFHFDGDFSHNKFNGTLPSDICILPSRCNIDLSYNNISGSIPRELVGTYGYIAPELAYTLVVTEKCDVYSFGVVTLETMMGRHPGDLISSLSKTCNEIILLKDVLDARLPLPERRDAGDVIVLVTIALACLNPSPKSRPSMQQVSQKLVSSNLPLAIPFNNISLQHLVNQDMQIS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1940 285 SUPERFAMILY L domain-like 3 155 - -
Lele15g1940 285 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g1940 285 PRINTS Leucine-rich repeat signature 38 51 - -
Lele15g1940 285 PRINTS Leucine-rich repeat signature 17 30 - -
Lele15g1940 285 SUPERFAMILY Protein kinase-like (PK-like) 148 266 IPR011009 -
Lele15g1940 285 Pfam Leucine rich repeat 17 75 IPR001611 GO:0005515
Lele15g1940 285 PANTHER LEUCINE RICH REPEAT KINASE 2 155 262 - -
Lele15g1940 285 Pfam Protein kinase domain 152 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g1940 285 Gene3D Transferase(Phosphotransferase) domain 1 135 264 - -
Lele15g1940 285 FunFam LRR receptor-like serine/threonine-protein kinase 12 87 - -
Lele15g1940 285 Gene3D Ribonuclease Inhibitor 1 113 IPR032675 -
Lele15g1940 285 ProSiteProfiles Leucine-rich repeat profile. 40 62 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1940 Lele-ChrLele15 12129058 12132336 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1940 140 259 Receptor kinase-like Gene Family AT1G25320 30.233 3.63e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele15g1940 Pkinase 3.5e-09 CL0016