Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1936 ATGTCGAACTTCTTCGCGACCTCTACAAATCCAAATCCCAACAAGTCCTTCGAGGTGACTCATCCTCCTGATGATTCTGTTTCGAGTCTTAGCTTCAGTCCCAAAGCCAACTTTCTCGTAGCCACTTCATGGGACAACCAGGTTCGATGTTGGGAGATAGCGCGGAATGGGGTAAATGTTGCCAGTGTGCCCAAGGCATCTGTATCACATGACCAGCCGGTTTTATGTTCAGCTTGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGTTGTGATAAGCAAGTGAAGATGTGGCCTCTGTTGTCTGGAGGCCAACCAATGACTGTTGCTATGCATGATGCGCCAATCAAAGAAGTAGCTTGGATTCCTGAGATGAGCCTGTTAGTATCTGGAAGCTGGGACAAGACTATGAAGTACTGGGATACTAGGCAGCCAAATCCAGTGCACTCACAACAACTCCCTGAACGATGTTATGCAATGACAGTGAGACATCCTCTGATGGTTGTTGGCACTGCTGATAGAAATCTAATCGTTTACAACTTGCAAAATCCTCAGAGAATTACTTCACCCTTGAAGTATCAGACGAGGTGCCTTGCTGCTTTTCCTGATCAACAAGGTTTCTTGGTACATCACACATTTGCAACTGCGGGTTCTGATGGTGCTTTTAACTTTTGGGACAAGGATAGCAAACAGAGACTTAAGGCCATGTTAAGGTGCAGTCAACCTATTCCATGTAGTGCCTTCAACAATGATGGTTCAATCTTTGCTTACTCGGTATGCTATGACTGGAGTAAAGGGGCTGAAAATCATAATCCTGCGACAGCAAAGAATTACATTTTCCTGCACTTGCCACAGGAATCTGAGGTTAAGGGCAAACCTCGACTTGGAACTACTGGGAGGAAGTAG 906 0.4581 MSNFFATSTNPNPNKSFEVTHPPDDSVSSLSFSPKANFLVATSWDNQVRCWEIARNGVNVASVPKASVSHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEVAWIPEMSLLVSGSWDKTMKYWDTRQPNPVHSQQLPERCYAMTVRHPLMVVGTADRNLIVYNLQNPQRITSPLKYQTRCLAAFPDQQGFLVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKNYIFLHLPQESEVKGKPRLGTTGRK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1936 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Lele15g1936 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 20 53 - -
Lele15g1936 301 MobiDBLite consensus disorder prediction 1 23 - -
Lele15g1936 301 SUPERFAMILY WD40 repeat-like 18 258 IPR036322 GO:0005515
Lele15g1936 301 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Lele15g1936 301 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Lele15g1936 301 PRINTS G protein beta WD-40 repeat signature 39 53 IPR020472 -
Lele15g1936 301 SMART WD40_4 102 141 IPR001680 GO:0005515
Lele15g1936 301 SMART WD40_4 61 99 IPR001680 GO:0005515
Lele15g1936 301 SMART WD40_4 10 52 IPR001680 GO:0005515
Lele15g1936 301 SMART WD40_4 184 226 IPR001680 GO:0005515
Lele15g1936 301 SMART WD40_4 144 180 IPR001680 GO:0005515
Lele15g1936 301 PANTHER MRNA EXPORT FACTOR AND BUB3 209 288 - -
Lele15g1936 301 Pfam WD domain, G-beta repeat 69 98 IPR001680 GO:0005515
Lele15g1936 301 Pfam WD domain, G-beta repeat 112 141 IPR001680 GO:0005515
Lele15g1936 301 Pfam WD domain, G-beta repeat 15 51 IPR001680 GO:0005515
Lele15g1936 301 Gene3D - 5 295 IPR015943 GO:0005515
Lele15g1936 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 20 53 IPR001680 GO:0005515
Lele15g1936 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Lele15g1936 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 108 IPR001680 GO:0005515
Lele15g1936 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 67 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1936 Lele-ChrLele15 12091453 12098227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1936 36 252 Miscellaneous Gene Families AT5G08390 21.525 4.59e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1936 15 12091453 12098227 Lele13g0519 13 17371825 17373478 CCT
Lele15g1936 15 12091453 12098227 Lele14g0442 14 16075857 16078332 CCT
Lele15g1936 15 12091453 12098227 Lele15g1955 15 12275538 12285321 CCT
Lele15g1936 15 12091453 12098227 Lele16g1977 16 12094760 12096779 CCT
Lele15g1936 15 12091453 12098227 Lele15g1936 15 12091453 12098227 ECH
Lele13g0548 13 17717281 17724024 Lele15g1936 15 12091453 12098227 hybridization
Lele14g0451 14 16154547 16160460 Lele15g1936 15 12091453 12098227 hybridization