Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1921 ATGTCTCACTTTGGAAGGTCGGGTCCTCCAGACATCACCGACACCTATTCGCTTCTAGTGCTCAACATCACATTCCGTACAACAGCTGATGACCTGTTTCCCCTGTTCGATAAGTATGGCAAGGTCGTCGACATCTTTATTCCCAGAGACCGAAGGACTGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGACGAGGCACAAAAGGCTGTGGACAGGCTGGATGGAAGAGTGGTTGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCAAATGCAGAGAAGATTCGCAAAGGAAGGATTATTGAAACGTTCCCCAAGTCTAGTTACAGGTCAAGAAGCCGCAGCCCCAGGAGGAGGCATCGTGATGATTACAGGGACAGGGATTATAGAAGGAGGGGTCGCAGCAGGAGCTTTGATAGGTATGAAAGGGATAGGTATCGTGGAGGAGACAGAGATTATCGTCGCAGGAGTAGGAGCCGTAGTGCAAGTCCTGATTACTATAAGAGTCGTGGAATGGATCGCTATGATGATGAGCGTCAAAGCCGAAGCCGAAGCCGATCTTTGGATAGTCGCTCCCCTGCACGACGTAGTCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGCTTCCCCTCAAAGAAGTATTTCCCCAAGGAGGAGCCCAAGGGGTGAAAGCCCTAAGAGTCATAGTTGTGATGGACGATTGCCTACGCCTCGCAGTGTTTCACCACGTGGTGAACCCAAGGATTCAAGAAGCCCATACCCTCGAAATTCCAATGGAGATGAATGA 810 0.4963 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKIRKGRIIETFPKSSYRSRSRSPRRRHRDDYRDRDYRRRGRSRSFDRYERDRYRGGDRDYRRRSRSRSASPDYYKSRGMDRYDDERQSRSRSRSLDSRSPARRSLSPRRSPSPQRSASPQRSISPRRSPRGESPKSHSCDGRLPTPRSVSPRGEPKDSRSPYPRNSNGDE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1921 269 MobiDBLite consensus disorder prediction 198 226 - -
Lele15g1921 269 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lele15g1921 269 MobiDBLite consensus disorder prediction 155 197 - -
Lele15g1921 269 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 249 - -
Lele15g1921 269 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Lele15g1921 269 Gene3D - 4 104 IPR012677 -
Lele15g1921 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lele15g1921 269 MobiDBLite consensus disorder prediction 155 269 - -
Lele15g1921 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lele15g1921 269 SUPERFAMILY RNA-binding domain, RBD 9 102 IPR035979 GO:0003676
Lele15g1921 269 SMART rrm2_1 17 90 IPR003954 GO:0003676
Lele15g1921 269 MobiDBLite consensus disorder prediction 105 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1921 Lele-ChrLele15 11951889 11954777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1921 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 6.83e-10 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0562 13 17825526 17828474 Lele15g1921 15 11951889 11954777 hybridization
Lele14g0466 14 16271970 16274880 Lele15g1921 15 11951889 11954777 hybridization