Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1919 ATGGATTCCACGCATATGGCGCTCTTCAGAGCTCTGAATCGCCATTTCTGCAGAGCTCATTCGAGTCAATGCATTCCTACGGTTTTTCTCCATCACCGGCTTAATTGCCTTTCTCATAACTATGCTATTCGCAACTCCAGCTCTTTTGCATCTTCTTCCCCTTCGCTGAGGAGCTTGTGTTCGGTGGTCACCCGACTGCCCTGTCATTTCCGGTGTGTTTCGAGCTCCGCTGCTCCGTTTTCTTCTTCTGGCGCTGGAAATGGCGGCCTTGGAGGGGTGAGTGGTGGTGGTGGTGGAGATGCCGGCGCCGGTGGTGATTCTGGAGGTGCCAATGTCAAATTGGTTGGTGATGTTGGTAAAGAACTTTCCGCACTTTCGCCTGATGTTATTATTCTCGATGTTGCGGGAATGGTGTGTGGGGGATGTGCAGCTAATGTGAAAAGAATTCTAGAAAGTCTACCTCAAGTGTCATCTGCTACTGTAAATCTAACAACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCAAAAACTGTACCAAATTGGCAACAGCAATTAGGAGAGGCACTTGCGGAGCATTTGACTAGCTGTGGTTTCAAGTCTAGCCTTCGGGATTCAGCAAGAGACAGTTTCCTCCAAGTTTTTGAAAGGAAGATGGAGGAAAAACACAGACAGTTGAAAGAAAGTGGGCGAGAGTTAGCTGTTTCCTGGGCTCTATGTGCTGTCTGCCTTGTTGGCCATCTTTCTCATTTCCTTGGAGGGAAGGCACCTTGGATCCATGCATTTCATTCCACTGGCTTTCACCTATCCCTGTCTTTGTTTACATTGGTTGGTCCAGGGCGTCAACTTATTCTTGATGGCATAAGAAGCCTTGTTAAAAAGGCACCAAACATGAACACATTAGTTGGTCTTGGGTCTTTGTCATCATTTGCTGTCAGCCTATTTGCTGCCTTGCTGCCCCAATTGGGCTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATCGCATTTGTCTTGTTAGGAAGGAATCTGGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACTGGACTTTTGAGTATATTGCCATCAAAAGCTCGCCTTCTGGTTAGCAATGACACTAAGGAGTTTGACTCAAGTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGGAGACCGAATTCTTGTGCTTCCTGGAGATCGTATTCCAGCAGATGGAATTGTCAGAACTGGTAGAAGCACTGTAGATGAGTCAAGTTTTACTGGAGAGCCTCTGCCAGCAACAAAACTACCTGGGAGTCAGGTTGCTGCTGGGAGTATAAATCTAAATGGCACTCTTACAATTGAAGTGCAGAGACCAGGCAGTGACACTGCCATGGGAGACATTGTTCGTCTGGTTGAAGAAGCACAGAGTAGGGAAGCCCCAGTTCAACGTTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTAATGGCAGCTTCTGCAGCCACATTTACATTCTGGAGTCTGTTTGGCACACGCATTCTACCTGCTACTCTTTATCAAGGAAGTGCAGTTTCTCTGGCATTGCAACTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTGGCCACACCTACAGCTGTGCTGGTTGGAACTTCTCTGGGAGCTACTAGAGGATTACTTTTACGGGGTGGAAACATTCTGGAGAAGTTTTCAATGGTAGATGCTGTTGTATTTGACAAAACAGGGACCTTGACAATTGGTAGACCAGTTGTGACAAAGATTGTCGATGCAAGTGGTCAAAACAAAAACTTAAGGCAAACTGCAGACAGTGATTGGTCAGATGTTGAAGTTCTGAGATTAGCAGCTGGAGTAGAATCAAATACAATACATCCAATTGGTAAAGCAATTGTAGAAGCTGCTCAGGCAGTTAATTGTCATAATGCAAAGGTAGCAGATGGAACATTTTTGGAAGAACCTGGGTCTGGTGCAGTAGCAATTATTAATAACAATAAGGTTTCAGTCGGGACTTTGGAATGGCTCATCAGGCAGGGAGTTAACAAAAATATTCATCAAGAAGTTGAGGACTATAGAAATCAGTCTTTTGTTTATGTGGGAGTAAATGATACTGTAGCTGGCCTTATATATTTTGAAGACCAGATAAGGGAAGATGCAAGATATGTTGTTGATGCTTTGTCTAAACAAGGAATTGGTGTTTATATGCTCTCGGGAGACAAAAGGAGTACGGCTGAGTATGTTGCATCTGTTGTTGGAATTCCTAGAGAGAAGGTGCTATCTGGAGTGAAGCCAGATGACAAAAAGAAGTTTATAAATGAACTCCAGAAAGATAAGAAAGTTGTTGCTATGGTTGGCGATGGGATCAATGATGCTGCTGCCTTGGCTTCGTCACATATTGGTATTGCATTAGGTGGAGGTGTTGGAGCTGCTAGTGAGGTGTCTTCTATAGTACTGATGGGCAACAGGCTCTCCCAGCTGCTTGATGCATTGGATCTTAGCAGACTTACAATGAAGAGTGTGAAACAAAATCTTGGGTGGGCTTTCCTATACAACATTGTTGGAATTCCAATTGCAGCTGGATTTTTACTTCCAGTAAGTGGGACCATGTTGACTCCGTCAATTGCAGGGGCTCTTATGGGCTTGAGTTCCATTGGGGTAATGACGAACTCGTTGCTTCTAAGATACAGATTTTCCACAAAGCAAAAACAAATCCATGGGACATCCCCGACGATCGCAACCCATGCCAATAGCGATCTTGCCCAGAAAGAGAGATTAAAATATGGACAAAGTGATATGGATGGTGCAAGATAG 2829 0.4468 MDSTHMALFRALNRHFCRAHSSQCIPTVFLHHRLNCLSHNYAIRNSSSFASSSPSLRSLCSVVTRLPCHFRCVSSSAAPFSSSGAGNGGLGGVSGGGGGDAGAGGDSGGANVKLVGDVGKELSALSPDVIILDVAGMVCGGCAANVKRILESLPQVSSATVNLTTETAIVWPVSEAKTVPNWQQQLGEALAEHLTSCGFKSSLRDSARDSFLQVFERKMEEKHRQLKESGRELAVSWALCAVCLVGHLSHFLGGKAPWIHAFHSTGFHLSLSLFTLVGPGRQLILDGIRSLVKKAPNMNTLVGLGSLSSFAVSLFAALLPQLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVSNDTKEFDSSVEVPSDSLSVGDRILVLPGDRIPADGIVRTGRSTVDESSFTGEPLPATKLPGSQVAAGSINLNGTLTIEVQRPGSDTAMGDIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLFGTRILPATLYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGATRGLLLRGGNILEKFSMVDAVVFDKTGTLTIGRPVVTKIVDASGQNKNLRQTADSDWSDVEVLRLAAGVESNTIHPIGKAIVEAAQAVNCHNAKVADGTFLEEPGSGAVAIINNNKVSVGTLEWLIRQGVNKNIHQEVEDYRNQSFVYVGVNDTVAGLIYFEDQIREDARYVVDALSKQGIGVYMLSGDKRSTAEYVASVVGIPREKVLSGVKPDDKKKFINELQKDKKVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMGNRLSQLLDALDLSRLTMKSVKQNLGWAFLYNIVGIPIAAGFLLPVSGTMLTPSIAGALMGLSSIGVMTNSLLLRYRFSTKQKQIHGTSPTIATHANSDLAQKERLKYGQSDMDGAR 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1919 942 CDD P-type_ATPase_HM 233 898 - -
Lele15g1919 942 FunFam Copper-transporting ATPase PAA1 chloroplastic 589 721 - -
Lele15g1919 942 Gene3D - 569 840 IPR023214 -
Lele15g1919 942 Pfam haloacid dehalogenase-like hydrolase 574 802 - -
Lele15g1919 942 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 298 899 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele15g1919 942 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Lele15g1919 942 FunFam Copper-transporting ATPase PAA1, chloroplastic 128 203 - -
Lele15g1919 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 329 870 IPR023298 -
Lele15g1919 942 SFLD C1.7: P-type atpase like 561 840 - -
Lele15g1919 942 FunFam Copper-transporting ATPase 1, putative 349 471 - -
Lele15g1919 942 SUPERFAMILY Calcium ATPase, transduction domain A 380 467 IPR008250 -
Lele15g1919 942 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 280 900 - -
Lele15g1919 942 ProSiteProfiles Heavy-metal-associated domain profile. 129 203 IPR006121 GO:0046872
Lele15g1919 942 PANTHER ATP7, ISOFORM B 126 901 - -
Lele15g1919 942 Gene3D - 348 471 - -
Lele15g1919 942 Pfam Heavy-metal-associated domain 132 200 IPR006121 GO:0046872
Lele15g1919 942 SFLD p-type atpase 561 840 IPR044492 -
Lele15g1919 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 580 586 IPR018303 -
Lele15g1919 942 PRINTS P-type cation-transporting ATPase superfamily signature 417 431 - -
Lele15g1919 942 PRINTS P-type cation-transporting ATPase superfamily signature 578 592 - -
Lele15g1919 942 PRINTS P-type cation-transporting ATPase superfamily signature 790 809 - -
Lele15g1919 942 PRINTS P-type cation-transporting ATPase superfamily signature 735 745 - -
Lele15g1919 942 PRINTS P-type cation-transporting ATPase superfamily signature 713 724 - -
Lele15g1919 942 PRINTS P-type cation-transporting ATPase superfamily signature 813 825 - -
Lele15g1919 942 Gene3D - 129 206 - -
Lele15g1919 942 SUPERFAMILY HMA, heavy metal-associated domain 130 179 IPR036163 GO:0046872
Lele15g1919 942 CDD HMA 132 202 IPR006121 GO:0046872
Lele15g1919 942 FunFam Copper-transporting ATPase PAA1 chloroplastic 706 857 - -
Lele15g1919 942 SUPERFAMILY HAD-like 577 896 IPR036412 -
Lele15g1919 942 Pfam E1-E2 ATPase 363 556 - -
Lele15g1919 942 Gene3D - 589 721 IPR023299 GO:0000166
Lele15g1919 942 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 623 869 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele15g1919 942 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 380 599 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele15g1919 942 Coils Coil 212 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1919 Lele-ChrLele15 11925578 11942015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1919 289 900 Primary Pumps ATPases AT1G63440 38.315 1.87e-116 379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0565 13 17845823 17849146 Lele15g1919 15 11925578 11942015 hybridization
Lele14g0468 14 16285871 16307290 Lele15g1919 15 11925578 11942015 hybridization