Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1917 ATGGCGGAGCGTGATTCTCACGGGCTGGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTGCGGCCTGCTGAAATTTGTGAAATTCTTCGTAATCATCAGATGTTTCATGTCACATCAGAACCTCCAAACATGCCACCGAGTGGTTCACTATTTCTTTTTGATAGGAAGGTATTGAGGTATTTTAGAAAGGATGGACATAACTGGAGAAAGAAAAAGGATGGAAAGACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTATTACATTGCTACTATGCTCATGGTGAAGAAAACGAAAATTTCCAGAGGCGAAGCTATTGGTTGCTTGAACAGGATATGATGCACATTGTTTTCGTCCACTACTTGGAAGTTAAGGGTCATAGGACAAGTGTTGGAGTAAAACCAGATACTGATGAGGTTTCATCAGATTCTCAAAGAGGCAGCTCTGCATCATCTACTTTGTCGAGAACTTATAATACTGTGCCTTCAAGAAGTACAGACTCCATGAGCCCAACTAGCACTTTGACATCCTTATGTGAAGATGCTGACTCTGAGGATATTCACTTAGCAAGTCCTGGGTCATGTTTAACCAAGTATGACAAAGAGTCCTCCAAGGGACAAGGTGGTGCTGGTACAAATAGTTCATATCTCCTGCGTCCCTTTTCAGGGTATCGTGCACAGTCATTGGTTTCTGGAGCAGACCATATTTCACAAGTTCAACGAGATAAGCATAGAGGCAGTGATGCTAGTACTTCTTTCATTGATGGCCAAAAAACAAATGGAATGGCCTTACGGGACAATGTCTTTGAACAAGGTATAAGTGGATTATCTACCGATCCATCCCTTGTATCATTTACTTCCATCCCATCCAATTCAATAGGAAACATTCTTGAACCAGAAAATACTGTTCCGGGTGATCTTTTAGCCATAAACAATGTCCTCATTGGGCCAGCTGGGAGTTCTCAGTCCCTCCAATCAAATTGGCAGGTTAATTTCTCTTTTTCATTTGTCCTTGAAGATCAATATATAATTGTTGAATGCTATGGTAGTTGGGAGGGCTTTGGCCTGGATGATACTCTTTGTTTTTTGTCATTCATTTTACTATTTGAACTATTGATCCAGATCCCTTTTGAAAGTAATCCAGGAAAGATGTACAAAGATCTTACAGCCCAATCTTTGGGTTTGGAATGTGGATCTGATTTTAGCAATGGTTTGCTGGAACATGAAATGCATAATCATGTTGCTTCTGGTCCGGTAACTTTTATCTGTCAGCGAAAAGAGGATCCTGTGCTGGGAAACTTTCCAGAACAGCATACAGATACTCAATCTCAAATTTTGCTGAAATGCAATTATGGGAATGAAGTTCCCACAAAAGAAAGTATTAATTATGCCTTGACTGTGAAGCAGCCCTTATTAGATGGGGAGGAAAGCCTAAAGAAACTTGACAGCTTCTCTCGATGGATTACTAAAGAACTTGAAGAGGTGGATGACCTTCATATGCAGTCATCACATGGCATTTCTTGGAGTGCTGATGAATGTGGGCATGTGATAGATGATTCCTCATTGAGCCCCTCCCTCTCTCAGGACCAGCTGTTCAGCGTAAATTATTTTTCACCTAACTGGGCTTATGCTGAATCAGAAACTGAGGTTTTGATCATTGGAACATTTTTGAAGAGTCAAACAGAGGTAGCAAATTGTAACTGGTCGTGCATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTCTAGCCAATGGAATTTTGTGCTGTCAGGCTCCACCTCTCAAGGTTGGACGGGTTCCCTTCTATGTAACATGCTCCAATAGGTTGGCTTGCAGTGAAGTGCGGGAATTTGATTACACAGAGAGCTTCGCTGAAAATGTTGACGTTTCAGATTTCTATATCAGTTCAACTGAGATACAGCTTCATCTGAGACTAGAGAAGCTACTTTCTTCAAAATCAGCGCTCCCTTCAAATTACAGCTTTGACAATGATATGGTGAAAAGAAACTTAATGTTTAAGCTCATTATGCTAAAAGAGGAAGAGGCGTTCGCAGACAGGGAAGAGCTGATGTCAGAGAACAATGAGTCCCAGCAAAAGGTGAAGGAGTTAATATTTCACATGCAAGTTAAAGAGAAGCTGTACTCTTGGCTGCTTCACAAAGCAATTGAAGATGGTAAAGGGCCAAATGGTTTGGATGAAGAGGGGCAAGGCGTGCTTCATTTAGCAGCTGCTCTTGGTTATGAGTGGGCAATAATGCCAATAGTTACTGCTGGAGTAAATATCAATTTTCGGGACGTGAATGGATGGACAGCTCTGCACTGGGCTGCATCCTATGGCAGGGAACGGACAGTTGCTGTACTTGTCTCCATGGGGGCAGCTGCTGGAGCATTGACAGATCCATCCCCAACGTTTCCGTTGGGAAGAACAGCAGCAGATCTTGCTTCTAGCAATGGGCACAAAGGAATCTCTGGTTTCCTTGCAGAGTCTTCATTAACCAGCCACCTTTCAACCCTCACAATGAATGATCAGAAGGGAGATGTTAGGCAAAGAGCTTCAGAAGTAGAAGTAGTACAGACAGTTTCAAAACGAACTGCAACACCGGGGTTTAGCGGTGATATGCCAGATGCCCTCAGCCTTAAGGATTCCCTTACTGCTGTTCGTAATGCTACACAGGCGGCTGATCGTATATACCAAGTATTCAGAATGCAATCATTTCAGAGGAAGCAGTTGACCGAGTTTGAAGATGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCCCTTATAGCTTCTAAGGGATGCAAGGCTGGATATGGAGATGATTTAGCCCATATTGCTGCTGTGCAAATACAGAAAAAGTTTCGTGGATGGAAGAAAAGAAAAGAATTTCTAATAATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTGAGAGGTCATCAGGTAAGGAAGCAGAATAAGTCAGTCATCTGGTCCGTGGGAATTTTGGAGAAGGTAATACTGCGATGGAGGCGCAAGGGCAGTGGTCTACGTGGCTTTCGACCAGATGCTAATAAAACCCCCCACCAAGAAGATGATACTGTGAAAGAGGATAATTACGATGTTCTCAAGGAAGGGAGGAAACAAAGTGAAGAAAGGTTCCAAAAGGCACTTTCGAGGGTGAAGTCTATGGTTCAGTATCCAGAGGCACGTGCTCAGTACCAGCGTCTGCTAAATGTTGTTGAGGAATTCCAGCGAACCAAGGCGTGCGACATGGATGTGATCAATTCAGAAGAGACAGTCGATGGTGTAGAGGACCTTATTGATATTAACATGCTCTTAGATGATGACAATTTCATACCCTTAGCATTTGATTGA 3390 0.4271 MAERDSHGLGPRLDIQQLQFEAQHRWLRPAEICEILRNHQMFHVTSEPPNMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWLLEQDMMHIVFVHYLEVKGHRTSVGVKPDTDEVSSDSQRGSSASSTLSRTYNTVPSRSTDSMSPTSTLTSLCEDADSEDIHLASPGSCLTKYDKESSKGQGGAGTNSSYLLRPFSGYRAQSLVSGADHISQVQRDKHRGSDASTSFIDGQKTNGMALRDNVFEQGISGLSTDPSLVSFTSIPSNSIGNILEPENTVPGDLLAINNVLIGPAGSSQSLQSNWQVNFSFSFVLEDQYIIVECYGSWEGFGLDDTLCFLSFILLFELLIQIPFESNPGKMYKDLTAQSLGLECGSDFSNGLLEHEMHNHVASGPVTFICQRKEDPVLGNFPEQHTDTQSQILLKCNYGNEVPTKESINYALTVKQPLLDGEESLKKLDSFSRWITKELEEVDDLHMQSSHGISWSADECGHVIDDSSLSPSLSQDQLFSVNYFSPNWAYAESETEVLIIGTFLKSQTEVANCNWSCMFGEVEVPAEVLANGILCCQAPPLKVGRVPFYVTCSNRLACSEVREFDYTESFAENVDVSDFYISSTEIQLHLRLEKLLSSKSALPSNYSFDNDMVKRNLMFKLIMLKEEEAFADREELMSENNESQQKVKELIFHMQVKEKLYSWLLHKAIEDGKGPNGLDEEGQGVLHLAAALGYEWAIMPIVTAGVNINFRDVNGWTALHWAASYGRERTVAVLVSMGAAAGALTDPSPTFPLGRTAADLASSNGHKGISGFLAESSLTSHLSTLTMNDQKGDVRQRASEVEVVQTVSKRTATPGFSGDMPDALSLKDSLTAVRNATQAADRIYQVFRMQSFQRKQLTEFEDDEFGLSDQQALSLIASKGCKAGYGDDLAHIAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQNKSVIWSVGILEKVILRWRRKGSGLRGFRPDANKTPHQEDDTVKEDNYDVLKEGRKQSEERFQKALSRVKSMVQYPEARAQYQRLLNVVEEFQRTKACDMDVINSEETVDGVEDLIDINMLLDDDNFIPLAFD 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1917 1129 ProSiteProfiles Ankyrin repeat profile. 745 777 IPR002110 GO:0005515
Lele15g1917 1129 Pfam IQ calmodulin-binding motif 957 974 IPR000048 GO:0005515
Lele15g1917 1129 Pfam IQ calmodulin-binding motif 979 996 IPR000048 GO:0005515
Lele15g1917 1129 FunFam Calmodulin-binding transcription activator 2 538 634 - -
Lele15g1917 1129 ProSiteProfiles Ankyrin repeat profile. 778 810 IPR002110 GO:0005515
Lele15g1917 1129 Pfam Ankyrin repeats (3 copies) 750 839 IPR002110 GO:0005515
Lele15g1917 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 952 1003 IPR027417 -
Lele15g1917 1129 SUPERFAMILY E set domains 545 630 IPR014756 -
Lele15g1917 1129 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lele15g1917 1129 SUPERFAMILY Ankyrin repeat 729 839 IPR036770 -
Lele15g1917 1129 ProSiteProfiles IQ motif profile. 977 1001 IPR000048 GO:0005515
Lele15g1917 1129 MobiDBLite consensus disorder prediction 146 187 - -
Lele15g1917 1129 Pfam IPT/TIG domain 547 623 IPR002909 -
Lele15g1917 1129 ProSiteProfiles Ankyrin repeat region circular profile. 778 803 - -
Lele15g1917 1129 ProSiteProfiles IQ motif profile. 954 983 IPR000048 GO:0005515
Lele15g1917 1129 Coils Coil 690 710 - -
Lele15g1917 1129 MobiDBLite consensus disorder prediction 247 267 - -
Lele15g1917 1129 MobiDBLite consensus disorder prediction 144 187 - -
Lele15g1917 1129 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1091 - -
Lele15g1917 1129 SMART iq_5 953 975 IPR000048 GO:0005515
Lele15g1917 1129 SMART iq_5 976 998 IPR000048 GO:0005515
Lele15g1917 1129 MobiDBLite consensus disorder prediction 204 225 - -
Lele15g1917 1129 SMART ANK_2a 745 774 IPR002110 GO:0005515
Lele15g1917 1129 SMART ANK_2a 778 807 IPR002110 GO:0005515
Lele15g1917 1129 SMART ANK_2a 817 846 IPR002110 GO:0005515
Lele15g1917 1129 Gene3D Immunoglobulins 538 634 IPR013783 -
Lele15g1917 1129 MobiDBLite consensus disorder prediction 208 225 - -
Lele15g1917 1129 Gene3D - 702 906 IPR036770 -
Lele15g1917 1129 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lele15g1917 1129 FunFam Calmodulin-binding transcription activator 2 953 1001 - -
Lele15g1917 1129 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lele15g1917 1129 Gene3D - 953 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1917 Lele-ChrLele15 11903105 11913865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1917 1 350 CAMTA Transcription Factor Family AT5G64220 49.143 3.14e-84 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lele15g1917 CG-1 1.2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0480 14 16464300 16468580 Lele15g1917 15 11903105 11913865 CCT
Lele15g1905 15 11757378 11759039 Lele15g1917 15 11903105 11913865 CCT
Lele16g1933 16 11697689 11703449 Lele15g1917 15 11903105 11913865 CCT
Lele13g0567 13 17859346 17870802 Lele15g1917 15 11903105 11913865 hybridization
Lele14g0470 14 16327244 16337673 Lele15g1917 15 11903105 11913865 hybridization