Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1911 ATGGCCACAGTCGCCACCACCAATCCACCGTCAGCTCCGCCGCCACAATCCCTAAAATTGGAGTCCCTTGCTCGCATAGACACCACCACTCTCTCCCAGTCCGAGCTTCAAGCGCTCTCTCTCTGCTCACTCTCCGCCTTCGACCTCCGCTCTACCACCAACCTCGTTTTCCCCCATGTCGAACGTTCACTCTTCAATGAGAGCGCTGGCTCTCGCCGCCAGACCTACTCTCGACCACGCAAACCCCTTTCCCCTTCTGACTCCCCCACAGGCCGCCGCCGCCGCGTCGCCGGTCTTCTTCCAACTCCAAAGCCCCCACCTGTCCCCGATGACGACCCAGAAAACTTAGAGAACCGCAAGATTATAGATTATTTGAAGCAATTGATTAGGGAAGACCCTAAATTCGATCAAGTTGAGCTACTCCCACCTTCTGTTACCCATGAAGTTGTGCCGGATTTGGAATTAGGGGGCGGGATGATGGAGAGCGAGGATATGAGGCTGGTGAGGAAGAGGAAGAGGGGGAGGAAGCCCAAAGTGAAGGTGCATTTGAAGGAGTGCTATAGAGAGATGGAGTTTGTGAATAAGGGTGGTGTTCCTCTTGATCTTTCTGCCTTGGAGAATGCGGACGATCCATTTGCTGAGGAGTTGAGGAGAAGGACTGAGGGGTTGCAGAGTGAAGAAGAGCTATTGGGGTTTTTGAGGGATTTGGGAGGACAATGGGGAAGTAGGAGGAAGAAGAGGAAGATTGTGGATGCCGGAGATTTCGGCGATGTACTGCCGGTTGGTTGGAAGCTTCTACTGGGTTTGAAGAGAAAAGATGGACGCGCGTGGATTTATTGCCGCAGATATATCAGTCCTAGTGGAGAACAATTTGTATCTTGCAAAGAAGTTTCTTCATATCTTCAGTCCCTCTTTGGTCACAATGATGCCCAGTTACCAATCAATCGTAGGGTTGAAAATATGCTGACGGACAATAGGGTGGCTACTCAAAGTTTTGCAGGTGTTACCCTTGAGGAGCAGGATAAAAGGATGATCATTGCAAATGACTCAGCTCCACCCAGTTCTTCTGAACGTAATGAACGGTTGAAGGATGTGACCTTATTGGGAATTGAGAATCTTGCAGATGTGCAAATACATGACCTATTTGAATGTCACAAGTGTAGCATGACATTTGATGAGAAGGATTCTTACTTGCAGCACCTTTTGTGTTTCCACCAAAGGACAACAAGGCGCTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATCAAAGATGGAAAATTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGACATGTGGGGATCCATGTTAGGAACTATGTGAGGAAAGTTGAAGAATCACCAGGTCAGGTAAATGTTCAAAGGAGAGATAAGTCTCCAATCAAGGAGGATTTGCCTTCAAGGATCTCTAAGATGGATGCGCTAATTGAAATTGCTCAGAACTCTATTATGGAGAATTTTGCAATTGAAACCCTTGGTAATCATGCTTCCTCTCCTGATAAATTGAATGTAATTTCTACTACAGAAACTGCTGTTGGTAACTTAGATCAGGACAGAATTTTTGAGTCTCCTCTCCGTGAACAGCATATGGAAGATAGTGTCAGTTACAAAAATGTGGATCACAATTTGAATCACCAAGATAGTAAACTTGCGGTCATGGATGAAGAAGTAGAGCGAACTGACGGTAGCAACAAAGTTATAGATTCTAAGATAGAGACCGGCAAGGATTCCATTGGTTTGTCAACTGTAAACGAGCAAAATGTTGATTCATTTGAGAAGTCAAAGATAAAAAATGATGCGGGATTGACTTTTGATGGTTTGGATCAGCCCATTGTTGATTTGGAAGGAGTTTCACAAAGCTCGTTACTTCCTTCATCTGGCAATGATACAATCCCTGAAGTTGAAAATAATCAAAATTCTGGTGGCTCTATTACTGTGGAGCAACTTAACCATGATGAAGATATTAGAATTATGAATGAGTTCAAAGTTGAAGTAGATGGCACAAAAGATGTATCTGTTATGTCTAAAATCCAAGAGACAACATTGCCAACTTCTGAAGATAAAACAGTGTCATCTGAAGTTCCAAGCCCATCTATGTCCAAGGTACAATCTTTGGATTGCTTTTCCCCTCTCACTGGACTCTCAGATAAGGTATAG 2202 0.4482 MATVATTNPPSAPPPQSLKLESLARIDTTTLSQSELQALSLCSLSAFDLRSTTNLVFPHVERSLFNESAGSRRQTYSRPRKPLSPSDSPTGRRRRVAGLLPTPKPPPVPDDDPENLENRKIIDYLKQLIREDPKFDQVELLPPSVTHEVVPDLELGGGMMESEDMRLVRKRKRGRKPKVKVHLKECYREMEFVNKGGVPLDLSALENADDPFAEELRRRTEGLQSEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPVGWKLLLGLKRKDGRAWIYCRRYISPSGEQFVSCKEVSSYLQSLFGHNDAQLPINRRVENMLTDNRVATQSFAGVTLEEQDKRMIIANDSAPPSSSERNERLKDVTLLGIENLADVQIHDLFECHKCSMTFDEKDSYLQHLLCFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEESPGQVNVQRRDKSPIKEDLPSRISKMDALIEIAQNSIMENFAIETLGNHASSPDKLNVISTTETAVGNLDQDRIFESPLREQHMEDSVSYKNVDHNLNHQDSKLAVMDEEVERTDGSNKVIDSKIETGKDSIGLSTVNEQNVDSFEKSKIKNDAGLTFDGLDQPIVDLEGVSQSSLLPSSGNDTIPEVENNQNSGGSITVEQLNHDEDIRIMNEFKVEVDGTKDVSVMSKIQETTLPTSEDKTVSSEVPSPSMSKVQSLDCFSPLTGLSDKV 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1911 733 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 667 IPR037472 -
Lele15g1911 733 ProSitePatterns Zinc finger C2H2 type domain signature. 431 451 IPR013087 -
Lele15g1911 733 ProSiteProfiles Zinc finger C2H2 type domain profile. 429 456 IPR013087 -
Lele15g1911 733 ProSitePatterns Zinc finger C2H2 type domain signature. 384 405 IPR013087 -
Lele15g1911 733 SMART c2h2final6 429 451 IPR013087 -
Lele15g1911 733 SMART c2h2final6 382 405 IPR013087 -
Lele15g1911 733 MobiDBLite consensus disorder prediction 638 659 - -
Lele15g1911 733 SUPERFAMILY DNA-binding domain 257 305 IPR016177 GO:0003677
Lele15g1911 733 MobiDBLite consensus disorder prediction 693 717 - -
Lele15g1911 733 MobiDBLite consensus disorder prediction 68 84 - -
Lele15g1911 733 Gene3D Classic Zinc Finger 358 457 - -
Lele15g1911 733 MobiDBLite consensus disorder prediction 68 117 - -
Lele15g1911 733 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 249 321 IPR001739 GO:0003677
Lele15g1911 733 ProSiteProfiles Zinc finger C2H2 type domain profile. 382 410 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1911 Lele-ChrLele15 11870588 11873694 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g1911 None None None