Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1901 ATGTTGGGGCACCGAGACGACGAACAGCTTTCCCTGGAAGATCCAGAATACGGGAAAAGAGGACAAAACAAACAGCCAGGGGGAGGTCAGAATCAGAAAACACTCGCCGCTTCTGAGGCATGCGCCGGTGTTCTCTGTGACGGAGGAGACATGGAAAATGACGACGTCGACATGCAAAGCGCCGAGAACAATGAAGCAGTAATGCTTCCTTCTTATCTAGAATTGGATGACATGAAGAAACGTTTGAAGGAGATGGAAGATGAAGCTACTGCTTTGCGAGAAATGCAGGCCAAGGTGGAGAAGGAGATGGGCTCCGTGCAAGATCCCGCTAATGCTGCTGCAAGTCAGGCCAATAGAGAGGAAATAGATTCTCGGTCAATCTTTGTAGGCAATGTAGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCGTGTGGAACAGTAAACAGAGTCACCATTCGTACTGACAAGTTTGGCCAACCCAAGGGTTATGCTTATGTGGAGTTCCTTGAGGCAGATGCTGTTCAGGAGGCACTTCTGCTGAATGAAACTGAACTACATGGGCGTCAGTTGAAGGTAACAGCCAAGAGGACCAACATACCCGGGATGAAGCAGTATCGTCCCCGCCGGCCCAATCCTTACATGGGGTTTCGAGGCAGAACCCCACATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGGAAGGTTCCAAGGTTCAGAATGCCAATGCGTTATAGCCCATACTATTGA 762 0.4895 MLGHRDDEQLSLEDPEYGKRGQNKQPGGGQNQKTLAASEACAGVLCDGGDMENDDVDMQSAENNEAVMLPSYLELDDMKKRLKEMEDEATALREMQAKVEKEMGSVQDPANAAASQANREEIDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEADAVQEALLLNETELHGRQLKVTAKRTNIPGMKQYRPRRPNPYMGFRGRTPHAPPFAYSPYGYGKVPRFRMPMRYSPYY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1901 253 MobiDBLite consensus disorder prediction 1 35 - -
Lele15g1901 253 SMART rrm1_1 126 197 IPR000504 GO:0003723
Lele15g1901 253 Gene3D - 59 198 IPR012677 -
Lele15g1901 253 Coils Coil 75 102 - -
Lele15g1901 253 CDD RRM_II_PABPs 126 197 - -
Lele15g1901 253 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 51 211 - -
Lele15g1901 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 201 IPR000504 GO:0003723
Lele15g1901 253 MobiDBLite consensus disorder prediction 1 20 - -
Lele15g1901 253 SUPERFAMILY RNA-binding domain, RBD 116 223 IPR035979 GO:0003676
Lele15g1901 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1901 Lele-ChrLele15 11725094 11730390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1901 126 196 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 9.55e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0583 13 18053617 18058717 Lele15g1901 15 11725094 11730390 hybridization
Lele14g0484 14 16499480 16501884 Lele15g1901 15 11725094 11730390 hybridization