Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1894 ATGGACGTCGGCGACGACATCAACGATCCAAGTTACTGGGAAAAGCCTATGGCGATTTTTCTCATACGTAATCACTCGGACCAGCTCCGTTGCATTGCATCTTCTCCAGACTCCAAGCTTCATTACCCTCTCTTCGTGGATTTCGCAGAGTTGATGGATGATGACCCTCACCTTGCCCGCCTTATCTTCACCGAACCCGCTACTTATTTACAAATATTCGACCAGGCTTCTGTTTGGGCTCATGGGTCTAAGCCCTGTGAAGGAACAAAATTCCAGTATGTAGATAATACTATAGTATCCCATGACTATCAAGAGATTAAAATCCAAGAAAGCACACAGGTTCTTGTTGTTGGTGTGATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGACATTGTTAAAGCTGGAGGTGATGTAATTGTTACTGGGGTGTTAACAGCAAAATGGTCATCAGAAGTCAAAGATGTGCGCTGTGACCTTGATCCTGTACTAATAGCCAACCATGTAAGGAGAACAAATGAACTGAAGTCAGAAATTGATATTCCTGATGATCTCGTTATGAAGTTCAAGCAGTTCTGGATCCATTTTAAGGATTGTACTTTGAAAGGTGGGAGGAATGCAATTTTACGAGGAATATGCCCACAAGTATTTGGACTCATCAAGGTCAAGCTGGCAGTTGCATTAACACTTATTGGAGGTGTGCAACACTTCCATGCTTCTGGAACAAAGGTACGATGGGAACGCCACTTACTCTTGGTTGGTGATCCTGGGGCAGGGAAATCTCAGTTTTTGAAATTTGCAGCAAAATTGAGCAATAGATCTGTAGTTACCACTGGCATGGGAAGCACCAGTGCTGGATTGACAGTTACTGTAGTGAAGGATGGAGGAGAACGGATGTTGGAAGCTGGAGCCCTTGTTCTGGCAGATGGTAGGTTGTGTTGCATAGATGAATTTGATGGTATGAGAGAACATGACAGAGCAACCATACATGAAGCCATGGAGCAGCAGACCGTAAGTGTTGCCAAGTGGAATGACCCGCTTCATCTTGATAATCTATGGTTTGATATAGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCGGTAGTTTCAACTCATATCCTTAACGAGGCAGAATCAGATAAAACGAGGCAAGATGAAGAAGATCTAGCAAATATCTGGCCTCTTTCTAGGCTCAAGAGTTGCAATGTTGCTGGGACAACTGTTCGCATGCTGGAAAGCTTGGTTCGCCTAGCTCAAGTTAAAATGGATGCTGCGAGATTTGCTTCAACTAGATACAAATTCTTAACTGCACGGAAAAACAGATACCAAGCTGGAGAGGATGATACTAGAAAAATTGGTTTTCACTCCATAACAAGACTATTTACAGTGGGTAGCTCCACCGCTTTAGCACTGAAGATGAAAAGATGGTTGAATGAGGATTTTGTTCTTGAGCAATTTTTTCTAAACTTGCTGTCTTCTTGA 1500 0.4293 MDVGDDINDPSYWEKPMAIFLIRNHSDQLRCIASSPDSKLHYPLFVDFAELMDDDPHLARLIFTEPATYLQIFDQASVWAHGSKPCEGTKFQYVDNTIVSHDYQEIKIQESTQVLVVGVIPRSILVILKDDLVDIVKAGGDVIVTGVLTAKWSSEVKDVRCDLDPVLIANHVRRTNELKSEIDIPDDLVMKFKQFWIHFKDCTLKGGRNAILRGICPQVFGLIKVKLAVALTLIGGVQHFHASGTKVRWERHLLLVGDPGAGKSQFLKFAAKLSNRSVVTTGMGSTSAGLTVTVVKDGGERMLEAGALVLADGRLCCIDEFDGMREHDRATIHEAMEQQTVSVAKWNDPLHLDNLWFDIVLVLLDTKNPEWDAVVSTHILNEAESDKTRQDEEDLANIWPLSRLKSCNVAGTTVRMLESLVRLAQVKMDAARFASTRYKFLTARKNRYQAGEDDTRKIGFHSITRLFTVGSSTALALKMKRWLNEDFVLEQFFLNLLSS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1894 499 SMART mcm 25 445 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele15g1894 499 PRINTS Mini-chromosome maintenance (MCM) protein family signature 306 320 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele15g1894 499 PRINTS Mini-chromosome maintenance (MCM) protein family signature 334 347 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele15g1894 499 PRINTS Mini-chromosome maintenance (MCM) protein family signature 248 263 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele15g1894 499 ProSiteProfiles MCM family domain profile. 207 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele15g1894 499 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 85 345 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele15g1894 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 426 IPR027417 -
Lele15g1894 499 Pfam MCM P-loop domain 209 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele15g1894 499 SUPERFAMILY Nucleic acid-binding proteins 85 157 IPR012340 -
Lele15g1894 499 Gene3D - 61 177 IPR012340 -
Lele15g1894 499 Pfam MCM OB domain 84 149 IPR033762 -
Lele15g1894 499 Gene3D - 203 353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1894 Lele-ChrLele15 11669664 11677866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1894 17 81 Core DNA Replication Machinery Family AT2G14050 52.308 5.36e-17 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0588 13 18100840 18108595 Lele15g1894 15 11669664 11677866 hybridization
Lele14g0488 14 16546271 16553658 Lele15g1894 15 11669664 11677866 hybridization