Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1878 ATGGGAAGCAGCTTTCTCGCTCCACCAGAGAAGAAGCGTTCGATATTGTACACCGAAACTGGTTCGGCCGACCCGAGCCTGTATGCAGCAAATGGGTCAACCAAGCGCTCCAAGTCCAAGCACCCACCGCCTCCCCTCAGTATCCCCCCGGGTCATATCGCTTTCCGATTGCTCTGCCAAGCTTCCCGAATTGGCGGCATAATTGGCAAGTCCGGCTCCGTTATACAGAACCTCCAGCAAGTTACGGGGGCTAAGATCCGCGTCGAAGATGCCCCATCCGAATCACCGGATAGGGTCATTGTTATGATTGCGCCGAGTGCTCTCAGCGGCAAGGTTTTTCTGAGACCCCAGAGTCAGAATTCAGATTCGGAACCCACCGAGGAGGATGACAATTATGGAGATGACGGCGGCGAAGATGAAGCTTTTGAGCTCTCAAAAGCTCAGGAAGCACTGTTGAAGGTGTTCGAGAGGATTCTGGATGTTGCGGCGGAGATTGAGGGCATTAGAGTGGAGAATGGACTAGTGTCCTGTAGGCTGCTGGCGGATGCGGCACAGATAGAAGGCAATGTGCAGTCTGTAAAGAAGGCGCTTCTTGCTGTTTCTCGCCGTCTTCAAGATTTTCCTCCATCCAGCAAGACAAAGACGATGGGAAGTAAGCCTCATGAAGTGGTTCAACATGAAAGCTTTGTTGCAGTTCCACATGATACTTCAACTGTAGGTCCATGTGAGACTTCGCCTAATCTGGCAGACCATCTTCTGCAGAGAGGCTCTGTGGTATCTACTATGCCCATCAGCTATGCTTCAGGAGTTCATTCAGTGTCAGCTGAGGTAGACAGAGTCTCTACCCTGGATCCAACAACACTTAAACAGGAAGTTTCCTTTAGAATTCTTTGCTCCAATGATAGGGTTGGTGGTGTAATTGGTAAAGGTGGCAGTATTGTCAGAGCCCTTCAGAATGAGACGGGGGCTACTATAAGTATTGGTCCTTCAGTGGAAGAATGTGAGGACAGATTGATTAGTGTTACTGCTTCTGAGAATCTTGAATCAAGATATTCCCCAGCGCAGAAGGCTGTCGTCCTTGTTTTCTCCAGGTCTGTAGAAGCAGGCATTGAGAAGGGGCTAGACTTAGGATCAAAGGGGTCCTCTGTTACTGCAAGACTTGTGGTCGCATCAAACCAAGTTGGTTGTTTATTGGGAAAAGGAGGATCAATAATCACAGAAATGCGGAAGGCAACTGGTGCTAGCATGAAAATAATGGGGACTGACCAGGCTCCAAAGTGTGCGTCACAGAACGATCAATTAGTACAGATATCTGGAGAGTTTTCGAATGTTCAAGATGCATTGTATAATGCAACTGGCAGATTGCGAGATAATCTTTTTAACAGCACACAGAACAGTGTTGGAACGAAAACCATTACCTCTGTATTACCTGATACCAGTCCTCATGGGAGATTGAGGGATCCTGTTCCACTTGGTGTCCAACAAGCCATTGTTAGACCAGTTGAACTAACCAGTTCAAGAGCTTTCACAAAATTGACCTTCAAGTTCAGTAGCACTCTTTGCACATTCCCTTGTCGTAAAGCGAGCTATTTTCTTAATCAGATTTCAGGTGCCAAGGTTATTGTCCACGAACCTCGTCCAGGAACAAGAGACAGGACCATTGTCATATCCGGGACACCTGATGAAACTCAAGCAGCTCAGAGCCTTCTTCAAGCATTTATCCTCACAGGTTCTTCATGA 1740 0.477 MGSSFLAPPEKKRSILYTETGSADPSLYAANGSTKRSKSKHPPPPLSIPPGHIAFRLLCQASRIGGIIGKSGSVIQNLQQVTGAKIRVEDAPSESPDRVIVMIAPSALSGKVFLRPQSQNSDSEPTEEDDNYGDDGGEDEAFELSKAQEALLKVFERILDVAAEIEGIRVENGLVSCRLLADAAQIEGNVQSVKKALLAVSRRLQDFPPSSKTKTMGSKPHEVVQHESFVAVPHDTSTVGPCETSPNLADHLLQRGSVVSTMPISYASGVHSVSAEVDRVSTLDPTTLKQEVSFRILCSNDRVGGVIGKGGSIVRALQNETGATISIGPSVEECEDRLISVTASENLESRYSPAQKAVVLVFSRSVEAGIEKGLDLGSKGSSVTARLVVASNQVGCLLGKGGSIITEMRKATGASMKIMGTDQAPKCASQNDQLVQISGEFSNVQDALYNATGRLRDNLFNSTQNSVGTKTITSVLPDTSPHGRLRDPVPLGVQQAIVRPVELTSSRAFTKLTFKFSSTLCTFPCRKASYFLNQISGAKVIVHEPRPGTRDRTIVISGTPDETQAAQSLLQAFILTGSS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1878 579 Gene3D K Homology domain, type 1 52 207 IPR036612 GO:0003723
Lele15g1878 579 Gene3D - 290 458 - -
Lele15g1878 579 CDD KH-I 532 571 - -
Lele15g1878 579 MobiDBLite consensus disorder prediction 123 138 - -
Lele15g1878 579 Pfam KH domain 294 345 IPR004088 GO:0003723
Lele15g1878 579 Pfam KH domain 56 103 IPR004088 GO:0003723
Lele15g1878 579 Pfam KH domain 385 448 IPR004088 GO:0003723
Lele15g1878 579 ProSiteProfiles Type-1 KH domain profile. 382 455 - -
Lele15g1878 579 MobiDBLite consensus disorder prediction 114 139 - -
Lele15g1878 579 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 289 361 IPR036612 GO:0003723
Lele15g1878 579 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 42 185 - -
Lele15g1878 579 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 377 458 IPR036612 GO:0003723
Lele15g1878 579 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 532 574 IPR036612 GO:0003723
Lele15g1878 579 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 105 IPR036612 GO:0003723
Lele15g1878 579 CDD PCBP_like_KH 384 449 - -
Lele15g1878 579 Gene3D K Homology domain, type 1 531 576 IPR036612 GO:0003723
Lele15g1878 579 ProSiteProfiles Type-1 KH domain profile. 291 358 - -
Lele15g1878 579 SMART kh_6 381 456 IPR004087 GO:0003676
Lele15g1878 579 SMART kh_6 290 366 IPR004087 GO:0003676
Lele15g1878 579 SMART kh_6 51 163 IPR004087 GO:0003676
Lele15g1878 579 MobiDBLite consensus disorder prediction 19 40 - -
Lele15g1878 579 CDD PCBP_like_KH 293 362 - -
Lele15g1878 579 MobiDBLite consensus disorder prediction 16 48 - -
Lele15g1878 579 CDD PCBP_like_KH 55 105 - -
Lele15g1878 579 ProSiteProfiles Type-1 KH domain profile. 52 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1878 Lele-ChrLele15 11556049 11562012 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0603 13 18211324 18213658 Lele15g1878 15 11556049 11562012 CCT
Lele15g1880 15 11568083 11570541 Lele15g1878 15 11556049 11562012 CCT
Lele13g0605 13 18220582 18225758 Lele15g1878 15 11556049 11562012 hybridization
Lele14g0503 14 16667227 16673861 Lele15g1878 15 11556049 11562012 hybridization