Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1877 ATGTCACTTTTTCTTTTCAGCGTTGCTGGCATGCGTGAGGGGAAAAAAAATCCTCTCATTTTGGCGCTCGGCGAAGACCTTGAAATTGTTGAAACCATGAACGTAGAGGAAGAGGTTGAGCGACTCAAACAAGAAATCAAGAGGCTTGGCCAAGCCCAACCAGATGGCTCTTACAAGGTCACATTTGGCACACTGTTTAATGATGACCAATTTGCAAATATATTTGAGGCGCTTGTGGGGACGCTAAGAGCAGCGAAGAAGAGGAAAGTAGTGACATATGATGGCGAGCTTCTGCTTCAAGGGGTCCATGATAATGTGGAAATCACGCTCAAGCCAACTGAAGGACCTGTGAAGAGTTAG 360 0.4583 MSLFLFSVAGMREGKKNPLILALGEDLEIVETMNVEEEVERLKQEIKRLGQAQPDGSYKVTFGTLFNDDQFANIFEALVGTLRAAKKRKVVTYDGELLLQGVHDNVEITLKPTEGPVKS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1877 119 PANTHER COSTARS FAMILY PROTEIN ABRACL 33 113 IPR044302 -
Lele15g1877 119 Gene3D Costar domain 33 115 IPR038095 -
Lele15g1877 119 FunFam costars family protein ABRACL 33 113 - -
Lele15g1877 119 SMART Costars_2 33 111 IPR027817 -
Lele15g1877 119 Coils Coil 32 52 - -
Lele15g1877 119 Pfam Costars 34 110 IPR027817 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1877 Lele-ChrLele15 11551364 11554537 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1877 15 11551364 11554537 Lele13g0608 13 18236101 18243271 CCT
Lele15g1877 15 11551364 11554537 Lele14g0505 14 16685274 16695851 CCT
Lele15g1877 15 11551364 11554537 Lele15g1875 15 11534931 11542975 CCT
Lele15g1877 15 11551364 11554537 Lele16g1906 16 11491901 11502057 CCT
Lele13g0606 13 18227245 18230488 Lele15g1877 15 11551364 11554537 hybridization
Lele14g0504 14 16676205 16679776 Lele15g1877 15 11551364 11554537 hybridization