Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1874 ATGATTAGTTTGACTCAAGAACTTCATTGGGTTCTTAAATGTAGGCTAATTTCGTCTTTGCCAGATGAAATAATAGTTTTAGTCGTGCAGGAAGATCAGCTCGTTCACCTCCTCCTCGAGCTCGTAAATGCCCCAAGCCAGATACTTCATCATCATCATCGTGCTTCTCCTGCTAGAACTGACAAACGTAGCACGTTCGGTCATGGCATGGCTATTGGAGCTGGGATTGCAGTTTTGGGTCCTGTTACCGTTAAACATGAAATAGAGAGCTCTGAGAAGGAGAAGGAGGAGAATAAGGTGGTTGCTGCTGCTGCTCCTCCTCCTCCGGCACCCACAGAAAATAGTCTTCTTGGCGATGATGCTTGCAATGTTCACTCGAAAGCTTTTCTTGATGTATTGCCTGAACAATTTATTGATGTCTTGCTAGTGGGATCTCATGTTGGTGAAATCGCGTTGTTCAACCTCGTTAGCTCCGATCCAATATGGCTTCTTTCTGGTTCCTCGCTCTCCTCCTTAGATGCATCGACATTCTTTCATGGCCCGTGCTTGCTTTGGGTTATCCTCTCTTCTTCAGTGAGTCAGGTTCTGGACAAGTATTCTTACATTTCCATCCCCATCATCATCTTCAACACCAGGTTTCAATATTGGCATTACATGAAGCTAATGATCGTCGCCTTCCTCGTGATGCCGGACTTTGGAAGAGCTTCTTATGTCTATGATCACCTCATCAAGTCATGCATCTACATGAATCCACAAGCAGTCATAAGCAGATTCAGGACCTGGAACAAGACGTTTGTCAAGAAAGAAGACTTTATAAAGCAGGCTGAGAAGTATATAACTCAAAATGGAACTGAAGCCTTAGAGAAACTCATTGCTACCAAGGACACAGAGCAAAGTCTTATTCATGCAGAAACAAGAAAAGAAGTTCCAACTACAGAGGAGAATGAGATGCTGAAGGAGCTTATTGTCTTTGCACAGACAAATAGAGGAAGGCTTCTCATGGAACAGAAAGACATCAAAGATTTGGAGATGATTGAGAAAGAGCAAGTTCCTGAAGGCAAACAAGTGATTATCTTTACTAATCTTCACCTCAATGCCAAGTTTTCAACACTACAGGTTGATCCAGCCTTGTGCTGCCTAAAATCAAATGAAAGCATTTCATCTGCTGTGGCGGAAACCGAAAAAATGGCGGCAGAAGACACAGAACATGGAACACATCCACAGATTTCAGCATCTGACAATGTACCGAAAGAGTGGACTTCTGCCATATGCCAATTGACAATGCCTTCTGATGCTAATTTGAATTCCCACCTTCAAGGACACAAGGCTGCTTGCGAAGCACTGAACGCGAAAACTAAAGCAACCGTGGCGAAAGACACAGGAAGCGGGGCATCTCCTCAGGTTTCTGCGTCTAAAAATGAACAACAGACAAAGTGGACTTGTGAGATATGCCAGTGGACAATGCCTTCTGAGGCTGCTTTGAAGACCCACATGTATGGAAAGAAGCATAAGGCTGCTTGTGAAGCACTGAAGGTGAAAAACAGTTGCAGATTTAGATGTGAAATGTGTAATGTAGATTGCACTAGTGTAAGTGACTTGGCTTCTCACTTGCAGGGTAAGAAGCACTTGGCTCAGAGTCAATTGCTAGGTGGCCACAGTTACAGATTTAGATGTGGAATGTGTAATGTGGATTGCACTAGTGTAAGTGACTTGGCTTCTCACTTGCAGGGTAAGAAGCACTTGGCTCAGAGTCAATTGCTAGGTGGGACGCGAAATTTTGGTTCGATGGGCTCCATCCAAGCAATTAAGAATGATAACAATTCAGAGGCTCGGAATTTGATCTCTTATTGGATACTTCTGTCATTGATATACCTCTTTGAGGATGCTTTTCTGAAGCTTCTCCAGTGGTTTCAGTATTGGTCTTACATGAAGCTCATGATCGTTATTTTCCTTGTGATACCGGACTTTGGAAGGGCTTCTCATGTATACAATCAACTTGTTGGGTTGATTATCTACATGAATCCACATGTCGTCATAAGCAAATTAAGGAGCTGGAAGAGGGTCTTTGTGAAGAAAGAAGACTTTCTAATGCAGTCTGAGAAATATATAACAGAGAAAGGAACTGGAGCCTTAGAGAAACTTATTGCTGCAAGGAACACAGAGCAAATCCTTGATGCAGAAACGGAAAGGGCAGTTCCAACTACAGAGAAGAATGAAATGCAGCTGGTGTATTTTTCATGTGACTACAACTTCGGAGCTGATTTGAATTTTCACTTGCATGGGAGGTTGCAAAAGGCTGCTTGCGAAGCCCTGAAAGCGAAAAACGGGTCGGTTGCTGTGAAAGTTTTCGTGAAGAAGAATGGCAAGTCATGTGGAGGAGAACCAAAGAAGATGATCAATACTTCGAATTCATTAGCACAGAAGATCACCTGTTATCATCCAAAAATAGAGCAGAAGAATGTTGAAATTGTGAATGTGCAAAGATATTATTATAGGCCAAAGAGTACTATAGACCAGGAAAACATGAGCAGAAGTGATCATGCCATTCCAAAGATGCAGGAATTGCAGAAGAACTCTGGAAAATCAGTACTTGAAATGAACAACTCCAGATTCAGATGTGATGTGTGTGATGTAAATTGCAGTAGTGAAGTTGACATGGCTAGGAGGCACTTTGTTCAAAATCAATTGATGCTTGTTAGTAAATGA 2706 0.4242 MISLTQELHWVLKCRLISSLPDEIIVLVVQEDQLVHLLLELVNAPSQILHHHHRASPARTDKRSTFGHGMAIGAGIAVLGPVTVKHEIESSEKEKEENKVVAAAAPPPPAPTENSLLGDDACNVHSKAFLDVLPEQFIDVLLVGSHVGEIALFNLVSSDPIWLLSGSSLSSLDASTFFHGPCLLWVILSSSVSQVLDKYSYISIPIIIFNTRFQYWHYMKLMIVAFLVMPDFGRASYVYDHLIKSCIYMNPQAVISRFRTWNKTFVKKEDFIKQAEKYITQNGTEALEKLIATKDTEQSLIHAETRKEVPTTEENEMLKELIVFAQTNRGRLLMEQKDIKDLEMIEKEQVPEGKQVIIFTNLHLNAKFSTLQVDPALCCLKSNESISSAVAETEKMAAEDTEHGTHPQISASDNVPKEWTSAICQLTMPSDANLNSHLQGHKAACEALNAKTKATVAKDTGSGASPQVSASKNEQQTKWTCEICQWTMPSEAALKTHMYGKKHKAACEALKVKNSCRFRCEMCNVDCTSVSDLASHLQGKKHLAQSQLLGGHSYRFRCGMCNVDCTSVSDLASHLQGKKHLAQSQLLGGTRNFGSMGSIQAIKNDNNSEARNLISYWILLSLIYLFEDAFLKLLQWFQYWSYMKLMIVIFLVIPDFGRASHVYNQLVGLIIYMNPHVVISKLRSWKRVFVKKEDFLMQSEKYITEKGTGALEKLIAARNTEQILDAETERAVPTTEKNEMQLVYFSCDYNFGADLNFHLHGRLQKAACEALKAKNGSVAVKVFVKKNGKSCGGEPKKMINTSNSLAQKITCYHPKIEQKNVEIVNVQRYYYRPKSTIDQENMSRSDHAIPKMQELQKNSGKSVLEMNNSRFRCDVCDVNCSSEVDMARRHFVQNQLMLVSK 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1874 901 PANTHER OS06G0651300 PROTEIN-RELATED 451 514 - -
Lele15g1874 901 SUPERFAMILY beta-beta-alpha zinc fingers 552 585 IPR036236 -
Lele15g1874 901 SUPERFAMILY beta-beta-alpha zinc fingers 517 547 IPR036236 -
Lele15g1874 901 ProSitePatterns Zinc finger C2H2 type domain signature. 520 542 IPR013087 -
Lele15g1874 901 Pfam TB2/DP1, HVA22 family 597 667 IPR004345 -
Lele15g1874 901 Gene3D Classic Zinc Finger 547 586 - -
Lele15g1874 901 Gene3D Classic Zinc Finger 464 510 - -
Lele15g1874 901 Gene3D Classic Zinc Finger 511 546 - -
Lele15g1874 901 SMART c2h2final6 556 580 IPR013087 -
Lele15g1874 901 SMART c2h2final6 479 503 IPR013087 -
Lele15g1874 901 SMART c2h2final6 518 542 IPR013087 -
Lele15g1874 901 SMART c2h2final6 871 890 IPR013087 -
Lele15g1874 901 MobiDBLite consensus disorder prediction 88 108 - -
Lele15g1874 901 Pfam Zinc-finger of C2H2 type 423 442 - -
Lele15g1874 901 Pfam Zinc-finger of C2H2 type 479 503 - -
Lele15g1874 901 Pfam Zinc-finger of C2H2 type 556 580 - -
Lele15g1874 901 Pfam Zinc-finger of C2H2 type 518 542 - -
Lele15g1874 901 SUPERFAMILY beta-beta-alpha zinc fingers 465 514 IPR036236 -
Lele15g1874 901 SMART ZnF_U1_5 553 587 IPR003604 GO:0003676|GO:0008270
Lele15g1874 901 SMART ZnF_U1_5 868 899 IPR003604 GO:0003676|GO:0008270
Lele15g1874 901 SMART ZnF_U1_5 515 549 IPR003604 GO:0003676|GO:0008270
Lele15g1874 901 SMART ZnF_U1_5 476 510 IPR003604 GO:0003676|GO:0008270
Lele15g1874 901 ProSitePatterns Zinc finger C2H2 type domain signature. 558 580 IPR013087 -
Lele15g1874 901 ProSitePatterns Zinc finger C2H2 type domain signature. 481 503 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1874 Lele-ChrLele15 11521847 11532955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1874 418 591 C2H2 Transcription Factor Family AT2G19380 24.599 1.96e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g1874 TB2_DP1_HVA22 8e-15 No_clan