Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1871 ATGGGAAGAGGGAAGATTGCAATTCGAAGGATCGAGAATTCGACGAGCAGGCAAGTAACTTTCTCGAAGAGAAGAAATGGATTGCTGAAGAAAGCCAGAGAGCTATCTGTTCTTTGTGATGCAGAAGTTGGATTGACTGTCTTCTCCAGCACCGGCAAGCTCTATGAGTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGATACAACAAGCTTAAAGAGGAACAACTAATGCTTATGAATCCTGCTTCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCCTGAGGCAACAACTACAATACTTGCAAGATTATCACAGGCAACTGATGGGCAAAGAACTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGCATGAGGAAGGATCAAATTTTAAATGACGAGATTAAAGAACTACACCAAAAGGGGAATCTCGTTCATGAAGAAAATGTGCAACTTCACACAAAGTTAGACATCATCCAAAAAGAAAATGAAGAACTGAGAAAGAAGGTTTTCGAAGCACAAAGCATGAATGAAGAAAATGGGACATCCAATCCTTCGTACACTATACGGAATGGATATGATTTACATGCACCAATCTGCCTCCAGCTAAGCCAGCCAGAGTCTCAATACAATGAACAACCAACCAAAACAATGGAACTGGGATCACAGCAGCATAAGCCGAAGCCAGTTGACAATCAAGGTTGGTTGTCTGACAACAAGCTGTCAACAACCAGGTCCTGA 783 0.4189 MGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLTVFSSTGKLYEFASTSMKSVIERYNKLKEEQLMLMNPASEVKLWQREVASLRQQLQYLQDYHRQLMGKELSGLGIKELQNLENQLEMSLKGVRMRKDQILNDEIKELHQKGNLVHEENVQLHTKLDIIQKENEELRKKVFEAQSMNEENGTSNPSYTIRNGYDLHAPICLQLSQPESQYNEQPTKTMELGSQQHKPKPVDNQGWLSDNKLSTTRS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1871 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele15g1871 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele15g1871 260 Coils Coil 163 193 - -
Lele15g1871 260 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele15g1871 260 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele15g1871 260 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lele15g1871 260 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele15g1871 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele15g1871 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele15g1871 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele15g1871 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele15g1871 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele15g1871 260 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele15g1871 260 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele15g1871 260 Coils Coil 120 140 - -
Lele15g1871 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 - -
Lele15g1871 260 MobiDBLite consensus disorder prediction 220 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1871 Lele-ChrLele15 11492422 11502827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1871 1 224 MADS-box Gene Family AT2G22630 57.642 1.95e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele15g1871 K-box 8.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0613 13 18273072 18282872 Lele15g1871 15 11492422 11502827 hybridization
Lele14g0513 14 16768291 16779336 Lele15g1871 15 11492422 11502827 hybridization