Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1857 ATGGAGATTTCATCTATGAGAATGTTATCTGAACTGGTAAGGCGATCGCGCGTTATAGCTCTTCTGCTGAATTGTGCTCTGAAAATAAGCTATTTTGCTGAGAAATTAGTTTTTTTAATTTTGAAGCAAGAAATAATGGAAGATCCTACCTTTCTTCATCAATGGCAATTGAACTCTCTGGAAGATCCAAGCTTATTGCCACTAGCCGCTGCTTTTGGAGAGACCTTACAACAACAACATTCATTCTCAAACCCAACAATGTTGAATCCCAAAACTTCCATGGAAACTACACTTTCTGGCATTGAAAGTCCCCAGAAACAGATTAAACCCAACAATTGGAGCCCCAACACAACAAGTGATCAGAACCAGACATTAGACACAGACTATGATTCTTGTTCCAATCTTCTTTCCTTTGTGAATTCAAGTTACATAAGCCAATTGGGGACAACATTAAAGCCTAATAATAAGGAGCAGATCCCATGTCATGAAGTCAACGGCACAATTTCTTCACCAGACATGTTGGCTTCCTCTCATGGATCCTTGGGAAATCAGAACTTTGTCTTCAATGCCAACCAAGATCCTAGAAACAATAATATTGGAACAAGTCCTAAATTTTCTCAACCTCAAGATCACATAATTGCTGAAAGAAAGCGCCGAGAAAAGCTCAGCCAACGCTTCATTGCTCTATCTGCTCTTGTCCCTGGCCTCAAAAAGACGGACAAGGCTTCTGTTCTTGGGGATGCTATAAAGTATTTGAAGCAATTGCAAGAGAGAGTGAGGGTTCTTGAAGAGGAACAGAGTAGAAGGAGCACTGTGGAATCTGTGGTGGTTGTGAAGAAAACTCAATTATTATTAGCTGATGAACAAGGAGATTGTTCTTCAGACTCTTCTAGTGAGCCCCGTGAAGAACCATTACCAGAAATTGAAGCTAGATTTTGTGAAAGAAACGTTCTCATAAGAGTTCACTGTGAGAAAACAACAGGAGTTATAGAAAAAACAGTGAGCGAGATTGAGAAACTTCATCTGACAGTCACAAGTACAAGTGTCATGACCTTTGGCAGTTCTGCTCTTGATATAACCATAATCGCTCAGATGGATAAGGAATTTTGCATGAAAGTGAAGGAGCTTCTAAGAAGCCTACGCTCAGCTTTTGAATCATTCATGTGA 1167 0.3993 MEISSMRMLSELVRRSRVIALLLNCALKISYFAEKLVFLILKQEIMEDPTFLHQWQLNSLEDPSLLPLAAAFGETLQQQHSFSNPTMLNPKTSMETTLSGIESPQKQIKPNNWSPNTTSDQNQTLDTDYDSCSNLLSFVNSSYISQLGTTLKPNNKEQIPCHEVNGTISSPDMLASSHGSLGNQNFVFNANQDPRNNNIGTSPKFSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQERVRVLEEEQSRRSTVESVVVVKKTQLLLADEQGDCSSDSSSEPREEPLPEIEARFCERNVLIRVHCEKTTGVIEKTVSEIEKLHLTVTSTSVMTFGSSALDITIIAQMDKEFCMKVKELLRSLRSAFESFM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1857 388 Coils Coil 245 265 - -
Lele15g1857 388 MobiDBLite consensus disorder prediction 99 125 - -
Lele15g1857 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 268 IPR036638 GO:0046983
Lele15g1857 388 Pfam Helix-loop-helix DNA-binding domain 209 256 IPR011598 GO:0046983
Lele15g1857 388 PANTHER BHLH TRANSCRIPTION FACTOR 73 384 - -
Lele15g1857 388 SMART finulus 212 261 IPR011598 GO:0046983
Lele15g1857 388 CDD bHLH_AtNAI1_like 209 280 - -
Lele15g1857 388 Gene3D - 201 270 IPR036638 GO:0046983
Lele15g1857 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1857 Lele-ChrLele15 11352540 11355036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1857 206 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.191 4.21e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele15g1857 HLH 2.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0622 13 18403096 18418612 Lele15g1857 15 11352540 11355036 CCT
Lele14g0529 14 16924765 16932287 Lele15g1857 15 11352540 11355036 CCT
Lele15g1858 15 11359055 11377012 Lele15g1857 15 11352540 11355036 CCT
Lele15g1857 15 11352540 11355036 Lele15g1857 15 11352540 11355036 ECH
Lele13g0623 13 18422884 18424905 Lele15g1857 15 11352540 11355036 hybridization
Lele14g0530 14 16936483 16938630 Lele15g1857 15 11352540 11355036 hybridization