Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1826 ATGGGTGAGGAGGAAGTTTTGCCGGATCATCTGCGCTGCAAGCGCACCGACGGGCGCAAATGGCGGTGTAGCCGGAGAGTGATGGACAACGTGAAGCTTTGTGAGATTCACTATCTTCAAGGCCGCCATCGGCAATACAAGGAAAAGGTCCCGGAGTCGTTGAAGCTTAAGAGAAAGCGTAAGAAAGGGATTAATAAGGACGACTCTGTTCTCAACAATGCGGAAGTGAAGGCACGGAAAGTGGTCAAGATGGCGAAGATGATGAAAAAAAGGATAAAAGTGTCAGATGATTCGGAGGCAATGGAAGCTCCCCTGCCGAAGAAGGCGTCCAAGCAGGGCAAGAAGCAGTTGGAGTTGATAAGGATGGTGCTGAAGAGAGAGGTTGAGAAAAGGAAGAAGAAGAAGGGAGAGAAGATGAAGAGGAAGAAGGAGGAGGAAGAAGAGGAATTGCATTACGGCGAGGGAGAGTTAACAAAAGAATTGCCCAATGGTTTGATGGCAATTTCTAGGGCATCAACGGCCCAAGAATACTGCAATGTAGGTTCCCAGTGTGATGTTAAATTATGTGTTGATCATAAGGCAATTACTCCACGTTACTTCAGGTCCAAGAATGTTGAGAGGCTGCCTGGGGGAAAGTTGCAGGTTTTACCGTATGGACGCAAGTGTAAGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAATCTCATAAAGTGTTCAAGCTGTCAAAAAGAGTTTTTCTGCATGGATTGCATTAAAGAACGGTATTTTGATACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCTCATGTAAAGACTGCTTGAGAAGTAAATGTAAAGACAACGAAACTAAGGAGTATTTGGCTGGTAAAAGCAAAGTTGATAGAATATTGCGTTTTCATTATTTGATTTGTACTCTCCTTCCTATACTGAAACAAATAAACGAAGACCTCAATGCTGAGATAGAAATAGAAGCCAAAATCAGAGGTAAAAGACCATCCGATATTCACATCAAGCAAGTTGAATTTTCCAGCAATGACCAGACTTATTGCAATCAATGCAAAACACCCTTTTTGGATCTCCATAGAAGCTGTCCAAGTTGTTCCTATAGCCTTTGCATAAGTTGTTGCAAGCAATTGTGTCAAAGGAACTCCTCTGAAGAAATTAATACATCTATTCCCAGGTCATCTGATGGGATGGATACCTGTCTTGCCAGTGAAAATCATCTTTTGGATAAGAAGGCCATCGCCAACGGCAATTCAGTAGGGACTTTTTCATTGCATAAATGCACAAACTATGATGATACTGGCAGTGTATCTTGTCCTCCAAAAGAACTTGGTGGTTGCGGTGATAATTTTCTTGAATTAAGATGTGTTTTTCCTTTAAGTTCGATCAAGGAGATGGAAGTAACAGCAGAAGAAATAGTTTGCAGCTACGACTTTCCAGAAACTTTGGACAAAAGTTTGAGCTGCTCATTGTGTCCAGACACAGATAATAAACTTGATGGATTTAAGCAGTTACGAGAAGCAGCTCTTAGGGAAGATTCAAAGGACAATTGGTTGTTTTGTCCCACTGTTTTGGACATCGGTGATGATAACTTTGAACACTTTCAGAAGCACTGGGGAAAAGGCCATCCGGTAGTAGTGCGAGGTGTGCTACAAAATACATCAAACCTCAGTTGGGATCCACTGGTCATGTTCTGTACTTATCTTGAGGGTAGCATCTCAAGATATGAGAATGACAGGGATGAACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTGGTTTACTGGATCTCTTAAATGTCAGCCACAGAAAAACATGTGGCATGAGATGCTGAAATTGAAGTGGTTACTGTCTTCACAACTATTTAAAGAATGGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTACCACTTCAAGAATACATGAATCCTACATCTGGTTTTCTGAATTTAGCAAGAAATCTGGCCCAGTGGAGTGCAAAGCATGACCTAGGACCATATATCTATCTTTCATATGGATGTGGTGATGAACAGAGTGACTTTGTGACAAAACTGTCTTATGATTCATATGATGTGGTTAATATTATGGCTCACACCACGGATGTCCCTCTCTCTACAGAACAGCTGACTAAAATAAGGAAGCTGCTGAAAAAGCACCAAAGTCTGTGTCGGAGGGATTCTTCCAGAATTAGTGCTGAAGAATTAAAGGAACAGACAGAGAAAGTAAATTCATTACTGCCTGCTGATGACATTGAAAAGACCAGGTTGCATAGAAAGGAGGGAGAAGAAAAGCATTTTTTCAGGAGAGTCAACAGAACAGCTTGCATCGCTACTGAAGCAACAGATGTAGCTTATCAGAGTATAGACAGCAAAATTTCCCAGGATGAAGAATGCGATTCTGATTCCGATTCTGAAAATCCCCATGGAAGTTCAAATAATAATAGAAATGAAAAGTTTATTAAACGTTCTGGTGCCCAGTGGGATGTCTTTTGCAGACAAGATGTTCCAAAGCTCTTAGAATACCTTAGAAGACACTCTGCTGAATTTTCTCCTTCCCATGACAATCACAAGCAGGTGGATCATCCACTTTTAGATCAAAGCTTCTTTCTTGGCAACACTCACAAGATGAGGCTCAAGGAGGAATATAAAATTGAACCATGGACTTTTGAGCAACATGTCGGTGAAGCTGTCATTATTCCTGCTGGATGTCCATACCAGATTAGAAATTCTAAGTGTTGTCTTCATGTAGTATTGGAATTTGTTTCCGCTGAGAATGTTGCCGAGTGTATCCAATTGATTGATGAAGTACGTCAGCTTCCAGAAGACCACAAAGCAAAAGTTGACCATCTTGAGGTGAAGAAAATGGCTATTCATAGCATCGATTCAGCAATAAAAGAGATACGGGAACTTACCTCCAAAACGTGA 2973 0.4127 MGEEEVLPDHLRCKRTDGRKWRCSRRVMDNVKLCEIHYLQGRHRQYKEKVPESLKLKRKRKKGINKDDSVLNNAEVKARKVVKMAKMMKKRIKVSDDSEAMEAPLPKKASKQGKKQLELIRMVLKREVEKRKKKKGEKMKRKKEEEEEELHYGEGELTKELPNGLMAISRASTAQEYCNVGSQCDVKLCVDHKAITPRYFRSKNVERLPGGKLQVLPYGRKCKRKKCHWCQRSDSWNLIKCSSCQKEFFCMDCIKERYFDTQNEVKMACPVCRGTCSCKDCLRSKCKDNETKEYLAGKSKVDRILRFHYLICTLLPILKQINEDLNAEIEIEAKIRGKRPSDIHIKQVEFSSNDQTYCNQCKTPFLDLHRSCPSCSYSLCISCCKQLCQRNSSEEINTSIPRSSDGMDTCLASENHLLDKKAIANGNSVGTFSLHKCTNYDDTGSVSCPPKELGGCGDNFLELRCVFPLSSIKEMEVTAEEIVCSYDFPETLDKSLSCSLCPDTDNKLDGFKQLREAALREDSKDNWLFCPTVLDIGDDNFEHFQKHWGKGHPVVVRGVLQNTSNLSWDPLVMFCTYLEGSISRYENDRDELEACLDWCEVEINIRQWFTGSLKCQPQKNMWHEMLKLKWLLSSQLFKEWFPAHFAEVIDALPLQEYMNPTSGFLNLARNLAQWSAKHDLGPYIYLSYGCGDEQSDFVTKLSYDSYDVVNIMAHTTDVPLSTEQLTKIRKLLKKHQSLCRRDSSRISAEELKEQTEKVNSLLPADDIEKTRLHRKEGEEKHFFRRVNRTACIATEATDVAYQSIDSKISQDEECDSDSDSENPHGSSNNNRNEKFIKRSGAQWDVFCRQDVPKLLEYLRRHSAEFSPSHDNHKQVDHPLLDQSFFLGNTHKMRLKEEYKIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCLHVVLEFVSAENVAECIQLIDEVRQLPEDHKAKVDHLEVKKMAIHSIDSAIKEIRELTSKT 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1826 990 ProSiteProfiles JmjC domain profile. 660 953 IPR003347 -
Lele15g1826 990 ProSiteProfiles Zinc finger RING-type profile. 227 273 IPR001841 -
Lele15g1826 990 Pfam JmjC domain, hydroxylase 839 934 IPR003347 -
Lele15g1826 990 Pfam WRC 8 49 IPR014977 -
Lele15g1826 990 SUPERFAMILY Clavaminate synthase-like 540 981 - -
Lele15g1826 990 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 989 IPR045109 GO:0032454|GO:0033169
Lele15g1826 990 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
Lele15g1826 990 Coils Coil 125 149 - -
Lele15g1826 990 Gene3D Cupin 532 788 - -
Lele15g1826 990 Gene3D Cupin 789 962 - -
Lele15g1826 990 SMART cupin_9 641 953 IPR003347 -
Lele15g1826 990 MobiDBLite consensus disorder prediction 808 833 - -
Lele15g1826 990 MobiDBLite consensus disorder prediction 93 113 - -
Lele15g1826 990 MobiDBLite consensus disorder prediction 130 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1826 Lele-ChrLele15 11140216 11147805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1826 8 47 GRF Transcription Factor Family AT2G22840 55.000 1.44e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele15g1826 JmjC 6e-10 CL0029