Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1813 ATGGGTGGAGAGAGAGGGAGAAAAGCTATAACAGAACAGGATTCGCCGGAATCGTTCGCCGGAGGTTCCAGTATCCCTCGAGCTGTCAAGCTTATATCTTCCTTGATTTCTCTCTCCCATTCAGTCAGGGTCTTCGCGGCAAAATGGCAACTCATTCGGAACAAGCTTGAGGAGCTCCATTCAGGACTAATCGCCGCCGAGAACTGCGATTCCGGCGAGAACCCATCGCTCTCCGGTCTGGTTCCTGCGATACTGGCCACAGCGAACGACTGCCATGATCTCGCTCGCCGTTGCGTTGATCTTTCATATAGCGGGAAGCTTCTGATGCAGAGCGATTTGGATGTGATGTTCGCCAGGTTCGCTTCTCACGCGAGGAAGCTATCAGAGGTATACTCAACTGGTATTTTGACTCACAAGTATGCCCTCGTTGTTTCGAGGCCTAGTCTCGGAGCTTGCAAAGATGATATGAGGTTTTACATGAGGGACTTGCTGACGAGAATGAAGATTGGCGATGTGGGAATGAAGAGGCAAGCTCTGATTAATCTGCACGAGGCTGTAACGGAAGACGAAAAGTATGTGAAAGTGATTGTGGAAATAGGAGATATCGTTCATCTTCTGGTAAATTTTCTCGATTCGCCGGAGATGGAAATCGAAGAAGAATCCGCCAAGGTGCTTTCTGTGATCGCCGGCTTTGATTCCTACAGAGGGGTTCTGATCACATCTGGGATTATTGCGCCTCTGATCCGAGTTTTGGAATGTGGGAACGAGTCAGGGAAGATCGGGTCTGCCAGGTGTTTGATGAAATTAACATTCAATTCAGACAATGCCTGGTCGGTTTCAGCTCATGGAGGAGTCACGTGCTTGCTCAAAATCTGCTCTAATGGAGAACCCAAAGGAGAATTGGTTGGTCCTGCTTGTGGGGTACTGAGAAATCTTGTAGGTGTTGAGGAAATAAAGAGATTCATGGTTGAAGAAGGTGCGGTTTCTACATTTATCGGGCTTGTGAAATCCAGGGATGAAGCGATTCAGGTAAATTCCATACAATTCATTCAAAGTATAGCCTCTGGAGATGAACAGGTTAGGCAAATGGTGATTAGAGAAGGTGGAATCCGGGCTTTATTACGGATTCTAGATCCAAAATGCTCTTGTTCTTCCAAAACCAGGGAGATAACAATGAGAGCTATTGAAAACTTGTGTTTTTCTTCATCTAGTTCTGTAAGTATATTAATGAGTTATGGCTTTGTGGATCAACTGCTTTATTATATTCGTAATGGGGAGGATTCAATCCAAGAATTGGCTCTGAAAGTAGCATTCAGATTCTGTGGAAGATCAGAGGAAGCTAAGAAAGCCATGGGAGATGCAGGTTTCATGCCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTTGAAGTTCGTGAAATGGCAGCTGAATCACTCTCTGCCATGGTTATGGTGCCCAAGAACAGAAAGAAATTTGTGCAGGATGATCAAAACATAGCTCTTCTTCTCCAACTGCTTGATCCAGAAGAGGGAAATTCAAGTCACAAGAAGTTCCTAATCTCTATCTTAATGTCATTGACAAGTTGTAACAGTGGGAGAAAAAAGATTGTGAGCTCAGGGTATGCCAAAAACATAGAGAAACTTGCAGAAGCTGAAGTTTCATCAGATGCTAAGAGGCTTGTGAGGAAGCTATCCACAAACAGATTCCGCAGTATGTTGAGTGGAATCTGGCACTCATGA 1740 0.4477 MGGERGRKAITEQDSPESFAGGSSIPRAVKLISSLISLSHSVRVFAAKWQLIRNKLEELHSGLIAAENCDSGENPSLSGLVPAILATANDCHDLARRCVDLSYSGKLLMQSDLDVMFARFASHARKLSEVYSTGILTHKYALVVSRPSLGACKDDMRFYMRDLLTRMKIGDVGMKRQALINLHEAVTEDEKYVKVIVEIGDIVHLLVNFLDSPEMEIEEESAKVLSVIAGFDSYRGVLITSGIIAPLIRVLECGNESGKIGSARCLMKLTFNSDNAWSVSAHGGVTCLLKICSNGEPKGELVGPACGVLRNLVGVEEIKRFMVEEGAVSTFIGLVKSRDEAIQVNSIQFIQSIASGDEQVRQMVIREGGIRALLRILDPKCSCSSKTREITMRAIENLCFSSSSSVSILMSYGFVDQLLYYIRNGEDSIQELALKVAFRFCGRSEEAKKAMGDAGFMPELVKFLNAKSFEVREMAAESLSAMVMVPKNRKKFVQDDQNIALLLQLLDPEEGNSSHKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1813 579 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g1813 579 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 578 - -
Lele15g1813 579 Gene3D - 160 568 IPR011989 -
Lele15g1813 579 SUPERFAMILY ARM repeat 161 560 IPR016024 -
Lele15g1813 579 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 327 IPR000225 GO:0005515
Lele15g1813 579 SMART arm_5 189 230 IPR000225 GO:0005515
Lele15g1813 579 SMART arm_5 315 355 IPR000225 GO:0005515
Lele15g1813 579 SMART arm_5 357 400 IPR000225 GO:0005515
Lele15g1813 579 SMART arm_5 272 314 IPR000225 GO:0005515
Lele15g1813 579 SMART arm_5 444 484 IPR000225 GO:0005515
Lele15g1813 579 SMART arm_5 231 271 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1813 Lele-ChrLele15 11035205 11036944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1813 143 433 U-box Gene Family AT2G23140 26.599 2.98e-14 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1831 15 11188386 11191536 Lele15g1813 15 11035205 11036944 CCT
Lele16g1860 16 11121265 11127672 Lele15g1813 15 11035205 11036944 CCT
Lele13g0689 13 18953127 18968110 Lele15g1813 15 11035205 11036944 CCT
Lele14g0588 14 17359667 17369268 Lele15g1813 15 11035205 11036944 CCT
Lele15g1794 15 10865001 10874824 Lele15g1813 15 11035205 11036944 CCT
Lele16g1825 16 10826679 10837868 Lele15g1813 15 11035205 11036944 CCT
Lele13g0671 13 18803658 18805400 Lele15g1813 15 11035205 11036944 hybridization
Lele14g0570 14 17220597 17222342 Lele15g1813 15 11035205 11036944 hybridization