Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1771 ATGGCGGACGAGGGGTACGATTACCCGGAACTGGTTGACGGAGATGCTGATGCTGATGCTGATGATAAGTTTTTTATAGATCTTGACACCGTTATGAATGTCCTCGATGAGGATTGTGATCCTTCGGAGAGTAGTCTGGAGGGTATTTCGTTAAAAAATGTCTCACCTGGCGAATCCAGCATCCATGATAATTTTCAGCTTCAAAGTGGAAATTCTGTGCTTTGCTGTGATCATGAAAATCAAGGACCTCCTTCGCAGACTTGCTCTTCCTCTCATGCTGTCCCTGATGGTTTTCAGCAGTTGGATCCTCATGATGGAAGTCATGAAATTTGCTACACAGAAAGGGAAGGAACTTCAGGATGTGAGATGCCAGCCCAATCTTTGGAACCTAGTGTCCCTGAACCACATTTCAACAGTTTATCGGTTTGTGGGGATAATTTGAGTTTGAATCCTCTCTGGAAGGAAAAAAATGAGAGCCAACTCAAGCATGTGGGAGAGGATGTTAAATCTGAATATGCTTCATACAGCCCTATCATTGAGAATGGTGATGTAAGTTTTGCACAATATAGAGCTTTTGATGAAGATATGTGTGAAGGCGTTTCTGGGCAACTGGAAACTGACTCGTGTACATCTTTTGAAATATCATTCATGGATGCTAATGGAGGTTCACATATGGCAACATCAACCAATTCTACCATTTGCCAAGGCTCCAATGCTCTTATTGATTCTTGTGACTACTTTTCATCCTTGCATGGTTGTAAGGGTACAGATGATAGATTTCTAGCTTCTGACTTGTCTCTTTCTTCTTATTTGCCTAATGTTTTTGGCTCTCAATTTTGGCCAAATCAAGAAATACTTGATAATGTGAAGGGTGAAAACGTGGAATATGTGGGTGATGCCTCACATGTGAGTAGTAACATGCATTCCAGCTCTACTGGTGGGATTCCTTTTCAAGATAATCAATTTATATCAGCAGATAGTGAATTTTCTTCATTTTTTCCTGGTAATGCTTCATACTTTCCCTGTGAAGACCAAGTAGTTTGTGTCAAAGGTGAAAGAGATGAACCAATTGCACCTTACCAGAACTCTCTTTACGAAGAGTACTCTGAGTTTAATGGAGGCCAAGGGATGAATCAATTAAATGGAGGCCTAGAGAAGAATCCTTTAAATAGTTCTTTTCCTTCCATGGGAAATCATAGTTTTAATTTGTTAGAGTGTGAGGATAAAAATGCTGATATATTATCCAACATACATCATCATTATCAAGAGATGATTGATGGTACTAGCTGTAAATTTCCAAGAGAGACAGCTAATTTGAATAGACAAGCGTTAGACAAATCTTTGCCCTATGCCAAGGCATCAATTATTACTCAGAAGCAGTTTGGTTATGTTAAGAATGAAGGAGAGGGAAAAATGATTCAATGTAGGAATTTTGATTCGCACTTTTCAAAAGCTGGGCCTGAATTGGTTCACAGAAGTTTTTCAGAGAAATCCCATGTTGAGGATGATGACTCCGATGTCTGTGTGATTGAAAGCATTAGTCATCCTGCACCGACAAATCGATCAACAGACCATCAGAATTCCCATAAGATATTGCAATACTCTTCATATGGTGATTCACACCCTAACATGTCAAGTACAAGGCCGAAGGCCTGTGATGAGCAATATATATTGCGAGTTGCACTACAGGATTTATCTCAGCCAAAGTCAGAAGTTATACCTCCAGATGGGTTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATACTGCTCAGGGGGGATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCGACTATTGCTTTAATACTGAAGGAAAGACATCCAACACCAATAGCTTGTACCAATGCACAAAAGGGGGAATTAGAAACTTTGAATCTGGATGTCGATGATGATGTTCTTGCTGAGGGTGGTGGAGTGAATGAAGATAAGCCTAGTGTAAGTCCGATTGAAAATAAGAATTTGTCAATGCAAACTAAGGGAAGGCCATCTGCAGGAACACTTATTGTTTGTCCCACTAGCGTCCTACGGCAATGGGCTGAAGAGTTGCAAAATAAGGTGACTAGCAAAGCAAACCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCGTATATTCTGGGCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAGAAAGGAAATTCTGAAGTTAATGCTGGTCTACCATCTTGTAAGAAAAGGAAATGCCCTCCTTCTAGTAAAAGTGGCAAGAAGGGATTAGACCGTGCTTTGCTTGAGGCTTCTGCTCGCCCTTTAGCAAAAGTGGCTTGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGGACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCGAAGCGAAGATGGTGCTTGTCTGGGACTCCTATCCAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTTTATAATACATTCTGCTCTACTATTAAGATTCCAATCAACAGAAATCCGAACAAAGGGTATAGAAAGCTGCAAGCTGTCTTAAAGACAATAATGTTACGCCGGACAAAAGGCACACTTCTTGATGGAGAACCTATTATTACACTGCCACCGAAATATGTGAAGCTGAAAAAAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGACTGGAGGCTGATTCTCGTGCACAGTTTCAGGAATATGCCAAGGCTGGAACTGTGAAGGAAAATTATGTCAATATTCTGTTGATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTCTCCTTGTTAAGCGCTACAATTCTAAGACTCTATGGATATCTTCAGTTGAGATGGCAAAGAAACTTCCTTGGGAAAAACGAACATCACTTCTGAAATGTTTGGAGGCTTCCTTGGCTCTTTGTGGCATCTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGCTTGTGGTCATGTTTTTTGTAACCAGTGTATTTGTGAACATCTCACTGGTGATGACAATCAGTGCCCTACTACAAATTGCAAAGCTCAACTGAGTATGTCTTCGGTGTTTTCCAGAGACACATTGAGCTGTTCTCTTTCTGACCAGGCTAGTGATAGTGTCTTTGGTTGCTCTGGTTCTGAAGTGGAGGGTTATGAGCCTTGTTCTCAGAGTCAGCCATCTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTATTGAGCTCATTGTGTAAGCCACAGGTTGATGCATCAAGAAGTATTTCAATGCAGATTAATTCTGATGAACATAGTGACTGCCATGGGAATTCCTCTGATGCCAACAAGGTGAAATCCTTCAATGATTTTCCTGAGAGTCAAAAAGTGTCGGATGGAAGCTCTGATGATTCAGTTGTTAGAGAGAAAGCTATTGTATTTTCTCAGTGGACAAGGATGTTGGATTTGCTTGAAGCATGCCTTAAGAGTTCTTCAATTCAGTATAGGAGGCTTGATGGCACAATGTCAGTTGTTGCTAGGGATAAAGCTGTTAAAGATTTTAATACTCTCCCAGAGGTAACAGTTATGATTATGTCTTTGAAAGCTGCCAGTCTTGGCCTCAACATGGTAGCTGCCTGCCATGTACTTATGCTTGATCTATGGTGGAATCCTACAACAGAAGATCAAGCGATTGACAGAGCGCATCGAATTGGGCAGACTCGCCCTGTAACTGTTTTACGGCTGACTGTGAGAGATACGGTTGAAGATCGTATTTTAGCTCTACAGCAAAAGAAGCGGAAGGTAGTTGCATCTGCGTTTGGGGAAGATGAAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3990 0.4115 MADEGYDYPELVDGDADADADDKFFIDLDTVMNVLDEDCDPSESSLEGISLKNVSPGESSIHDNFQLQSGNSVLCCDHENQGPPSQTCSSSHAVPDGFQQLDPHDGSHEICYTEREGTSGCEMPAQSLEPSVPEPHFNSLSVCGDNLSLNPLWKEKNESQLKHVGEDVKSEYASYSPIIENGDVSFAQYRAFDEDMCEGVSGQLETDSCTSFEISFMDANGGSHMATSTNSTICQGSNALIDSCDYFSSLHGCKGTDDRFLASDLSLSSYLPNVFGSQFWPNQEILDNVKGENVEYVGDASHVSSNMHSSSTGGIPFQDNQFISADSEFSSFFPGNASYFPCEDQVVCVKGERDEPIAPYQNSLYEEYSEFNGGQGMNQLNGGLEKNPLNSSFPSMGNHSFNLLECEDKNADILSNIHHHYQEMIDGTSCKFPRETANLNRQALDKSLPYAKASIITQKQFGYVKNEGEGKMIQCRNFDSHFSKAGPELVHRSFSEKSHVEDDDSDVCVIESISHPAPTNRSTDHQNSHKILQYSSYGDSHPNMSSTRPKACDEQYILRVALQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERHPTPIACTNAQKGELETLNLDVDDDVLAEGGGVNEDKPSVSPIENKNLSMQTKGRPSAGTLIVCPTSVLRQWAEELQNKVTSKANLSVLVYHGSNRTKDPYILGKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGNSEVNAGLPSCKKRKCPPSSKSGKKGLDRALLEASARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFCSTIKIPINRNPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKYVKLKKVDFSREERDFYSRLEADSRAQFQEYAKAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSKTLWISSVEMAKKLPWEKRTSLLKCLEASLALCGICNDPPEDAVVSACGHVFCNQCICEHLTGDDNQCPTTNCKAQLSMSSVFSRDTLSCSLSDQASDSVFGCSGSEVEGYEPCSQSQPSDSSKIKAALEVLSSLCKPQVDASRSISMQINSDEHSDCHGNSSDANKVKSFNDFPESQKVSDGSSDDSVVREKAIVFSQWTRMLDLLEACLKSSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKVVASAFGEDETGGRQSRLTVDDLKYLFMM 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1771 1329 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 672 758 - -
Lele15g1771 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 908 1328 IPR027417 -
Lele15g1771 1329 MobiDBLite consensus disorder prediction 669 683 - -
Lele15g1771 1329 SMART helicmild6 1188 1271 IPR001650 -
Lele15g1771 1329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1009 1067 IPR013083 -
Lele15g1771 1329 SMART ultradead3 579 877 IPR014001 -
Lele15g1771 1329 ProSitePatterns Zinc finger RING-type signature. 1031 1040 IPR017907 -
Lele15g1771 1329 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 454 1328 - -
Lele15g1771 1329 Pfam Helicase conserved C-terminal domain 1171 1271 IPR001650 -
Lele15g1771 1329 Gene3D - 915 1328 IPR027417 -
Lele15g1771 1329 Gene3D - 559 645 IPR038718 -
Lele15g1771 1329 Gene3D - 791 912 IPR038718 -
Lele15g1771 1329 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 782 912 - -
Lele15g1771 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 598 862 IPR014001 -
Lele15g1771 1329 MobiDBLite consensus disorder prediction 755 790 - -
Lele15g1771 1329 MobiDBLite consensus disorder prediction 660 683 - -
Lele15g1771 1329 SUPERFAMILY RING/U-box 1013 1060 - -
Lele15g1771 1329 ProSiteProfiles Zinc finger RING-type profile. 1016 1055 IPR001841 -
Lele15g1771 1329 CDD SF2_C_SNF 1174 1281 - -
Lele15g1771 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1167 1324 IPR001650 -
Lele15g1771 1329 SMART ring_2 1016 1054 IPR001841 -
Lele15g1771 1329 CDD DEXDc_SHPRH-like 583 900 - -
Lele15g1771 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 900 IPR027417 -
Lele15g1771 1329 Gene3D - 671 758 IPR038718 -
Lele15g1771 1329 Pfam Zinc finger, C3HC4 type (RING finger) 1016 1053 - -
Lele15g1771 1329 Pfam SNF2-related domain 603 977 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1771 Lele-ChrLele15 10677334 10685472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1771 467 1328 RAD5 or RAD16-like Gene Family AT1G61140 60.137 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele15g1771 SNF2_N 2.1e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0706 13 19096834 19097718 Lele15g1771 15 10677334 10685472 CCT
Lele14g0603 14 17506180 17507046 Lele15g1771 15 10677334 10685472 CCT
Lele15g1776 15 10717805 10718683 Lele15g1771 15 10677334 10685472 CCT
Lele16g1808 16 10684273 10685139 Lele15g1771 15 10677334 10685472 CCT
Lele15g1771 15 10677334 10685472 Lele14g0601 14 17484312 17486554 CCT
Lele15g1771 15 10677334 10685472 Lele16g1810 16 10707624 10709850 CCT
Lele13g0711 13 19129846 19140050 Lele15g1771 15 10677334 10685472 hybridization
Lele14g0608 14 17539934 17547284 Lele15g1771 15 10677334 10685472 hybridization