Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele15g1731 | ATGTCTGACGCTGAAAATCAAACCTCTTTGAAAGATGGCGATCGTCTTGGTTCAAAGCCTGACAGGGGCTACCGCGACAAGCCCAATTCTCATGGATCTGATCACGAGAGGCAAAGGGTGAGAAAGCGAGATGGAGAGAGGGAAACTTATCATGCACACCATCACAAGGACTCTAAAAATGGAGGCTTTAGAAGAAAAGGCAGTAATGACAATTATAATCGTCATCAGAACTGTGATTATGACAGGTATCGAGGTCATGCACGAGATGGAGAAATGAGGCACAGATATGGAAGACGATCAAGTTACAGATCCAAGAGGGAATCTAGATCTCGCTCCAGATCCCCCCCTCATTCAGAAAGCAAAAGGATAAGTGGTTTTGATATGGCGCCACCTTCTGTTGCTGGAGCACCTGCTGCTGCAGTTGATAGTGCAGGGCAAATGCTGGGGACCACACATCCAGTAACTCTGCAGACTGTGCCATCATTTGGGATGTCACAGGTTGGAGCTCTTCCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCGCGACGAGTTTATGTTGGTGGGCTTCCCCCTTTTACTAATGAGCAGGCAGTTGCAGCATTCTTCAGTCATGTTATGGTAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTATACATTAATCACGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGCAGGCCTACAGACTATAATCCTTCAGTAGCTGCTGCTCTAGGTCCGAGCCAACCAAGTCCAAATCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGCGGAAACGAGGGACCTGATCGCATCTTTGTTGGTGGGCTACCATACTACTTTACTGAAGAACAAATAAAAGAATTGCTCCAAGCTTTTGGACCTCTCAGAGCGTTTGATCTAGTTAGAGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACAGTCTGTGTACAGTCTAAAACAGAACAGGAGAATATCTTTGTACAGGCACAACAGCATATTGCTATTCAGAGAATAGCCATGGAAGCTGGTGGGCTAAATATTCCAGGAGTGGAAAGAGCATTAACCAATCTTAATGAAAATGCTACCAAAGTTTTATGCTTGACTGAGGCCATTACCGCTGATCAACTAAGGGATGATGAAGAGTATGGAGAAATATTGGAAGACATGCGGGATGAATGCAGCAAATTTGGGACCTTGATAAATGTTGTTATCCCGCGTCCAAATGGCATCGGTGAGGCTTCCCCAGGTGTTGGAAAGGTGTTCTTGGAATATTCTGATAGTAGTGGAAGTTTGGCTGCAAAGAATGCACTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGCGCCTTCTATTATTCCGAAGAAAAATATCATAGCATGCAGTATGATGATGTATAA | 1611 | 0.4488 | MSDAENQTSLKDGDRLGSKPDRGYRDKPNSHGSDHERQRVRKRDGERETYHAHHHKDSKNGGFRRKGSNDNYNRHQNCDYDRYRGHARDGEMRHRYGRRSSYRSKRESRSRSRSPPHSESKRISGFDMAPPSVAGAPAAAVDSAGQMLGTTHPVTLQTVPSFGMSQVGALPLMSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSHVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLNLSAVGLVAGAIGGNEGPDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQENIFVQAQQHIAIQRIAMEAGGLNIPGVERALTNLNENATKVLCLTEAITADQLRDDEEYGEILEDMRDECSKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSLAAKNALNGRKFGGNVVSAFYYSEEKYHSMQYDDV | 536 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele15g1731 | 536 | Gene3D | - | 182 | 283 | IPR012677 | - | |
| Lele15g1731 | 536 | MobiDBLite | consensus disorder prediction | 1 | 136 | - | - | |
| Lele15g1731 | 536 | FunFam | U2 snRNP auxiliary factor large subunit | 284 | 396 | - | - | |
| Lele15g1731 | 536 | TIGRFAM | U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor | 25 | 533 | IPR006529 | GO:0003723|GO:0005634|GO:0006397 | |
| Lele15g1731 | 536 | CDD | RRM3_U2AF65 | 433 | 520 | - | - | |
| Lele15g1731 | 536 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 309 | 378 | IPR000504 | GO:0003723 | |
| Lele15g1731 | 536 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 458 | 518 | IPR000504 | GO:0003723 | |
| Lele15g1731 | 536 | FunFam | U2 snRNP auxiliary factor large subunit | 430 | 534 | - | - | |
| Lele15g1731 | 536 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 307 | 385 | IPR000504 | GO:0003723 | |
| Lele15g1731 | 536 | MobiDBLite | consensus disorder prediction | 8 | 97 | - | - | |
| Lele15g1731 | 536 | Gene3D | - | 300 | 403 | IPR012677 | - | |
| Lele15g1731 | 536 | Gene3D | - | 429 | 534 | IPR012677 | - | |
| Lele15g1731 | 536 | CDD | RRM2_U2AF65 | 307 | 383 | - | - | |
| Lele15g1731 | 536 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 270 | IPR000504 | GO:0003723 | |
| Lele15g1731 | 536 | SUPERFAMILY | RNA-binding domain, RBD | 68 | 267 | IPR035979 | GO:0003676 | |
| Lele15g1731 | 536 | SMART | rrm1_1 | 308 | 381 | IPR000504 | GO:0003723 | |
| Lele15g1731 | 536 | SMART | rrm1_1 | 441 | 521 | IPR000504 | GO:0003723 | |
| Lele15g1731 | 536 | SMART | rrm1_1 | 188 | 266 | IPR000504 | GO:0003723 | |
| Lele15g1731 | 536 | CDD | RRM1_U2AF65 | 186 | 268 | - | - | |
| Lele15g1731 | 536 | FunFam | U2 snRNP auxiliary factor large subunit | 182 | 283 | - | - | |
| Lele15g1731 | 536 | PANTHER | RNA-BINDING PROTEIN | 21 | 533 | - | - | |
| Lele15g1731 | 536 | SUPERFAMILY | RNA-binding domain, RBD | 308 | 526 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele15g1731 | Lele-ChrLele15 | 10367278 | 10374698 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele15g1731 | 309 | 514 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 25.604 | 6.81e-08 | 53.5 |