Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1728 ATGTACATAGCTTCCATGCGAAAGTCTTTCAAGGACTCCTTGAAAGTGCTTGAAGCTGATATTCAGCATGCCAATACCCTAATTGCCCGTTTGAAGTTTCGAAGGCTGAAGCCCTGTGTCCTCTTTGGGGGCAATGGCTGTAATATAGGTTCTTGGCATGCCAATAGCCACTCCTTGATGGTGCTGGCTAACAAAAATTGCATTGCCATGCAAACGGATGTTAGGGCATCCGATTTTCCGAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCTGCTGCACACCTGTTTCTTTTTTTAGTGCAATGGACGGACTGTAATCTTGCAGGAGTCCTTGGGCTGCTAAGAATCCTAATTTACAAGGTTTACGTGGATGGCACAACGACCATGTCTACGCAAGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCATCTTTATTGCAACTTCAGAAAGGTGTCACTGATACAGAGGATAAAAAACAAAAGGCTGTATGCATGGAGCGGTATCGAAGGAGAGATGATGAGGAACATAGGCAATCTTCAGATGTTGACATTGAAAGAGATGAAGAATGTGGTATATGCATGGAGATGAACAGTAAGGTTGTGTTGCCCAACTGCAACCATGCAATGTGCTTGAAATGCTACCGTGAATGGAGAACAAGGTCACAGTCATGCCCCTTCTGCAGGGACAGCCTGAAGAGGGTGAACTCGTGCGATCTCTGGGTATTCACCGATAGTAGAGACGTAGTAGATATGGCTACGGTGACGATGGAGAATCTTAGAAGGCTTTTCATGTACATAGACAAGTTGCCTCTGATTGTTCCAGACTCCCTTTTTGACCCCTATGACTCTCACCTCAGATAA 888 0.4459 MYIASMRKSFKDSLKVLEADIQHANTLIARLKFRRLKPCVLFGGNGCNIGSWHANSHSLMVLANKNCIAMQTDVRASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGVLGLLRILIYKVYVDGTTTMSTQERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRRRDDEEHRQSSDVDIERDEECGICMEMNSKVVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSCDLWVFTDSRDVVDMATVTMENLRRLFMYIDKLPLIVPDSLFDPYDSHLR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1728 295 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Lele15g1728 295 SMART ring_2 199 236 IPR001841 -
Lele15g1728 295 SUPERFAMILY RING/U-box 188 242 - -
Lele15g1728 295 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Lele15g1728 295 FunFam RING/U-box superfamily protein 177 246 - -
Lele15g1728 295 Pfam Zinc finger, C3HC4 type (RING finger) 196 242 - -
Lele15g1728 295 PANTHER RING FINGER PROTEIN 41, 151 8 293 - -
Lele15g1728 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 247 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1728 Lele-ChrLele15 10343530 10346905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1728 170 237 Glycosyltransferase AT5G37200 32.877 5.07e-06 44.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0637 14 17774222 17785923 Lele15g1728 15 10343530 10346905 CCT
Lele15g1734 15 10387597 10399732 Lele15g1728 15 10343530 10346905 CCT
Lele16g1772 16 10395349 10409105 Lele15g1728 15 10343530 10346905 CCT
Lele13g0751 13 19445701 19449109 Lele15g1728 15 10343530 10346905 hybridization
Lele14g0642 14 17815686 17819302 Lele15g1728 15 10343530 10346905 hybridization