Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1721 ATGCAGGGATTTAAGAAAGTGTCATCAAAGAGATGGGAATTCAAGCAGGAGAAATTTAAGAGAGGTTGCAAGAACATGCTGGCGGAGATAACGAGGAAGAAGTGCGAGGCGAGCGTGTTCCCTTCATACTTGAAGTCTTGTTGTGAGGAAAATGCAGCCGCAAGCTGTGCAGGAGATGAACAAAGCAATAATCATGAATTACTGCTACAGCAGAACCAAGACCTCAAGAAGCAGAACCAGCACCTTCAATCCCAAATTGCTCACTTCAAACAATTACAAACCAGTGTAGTCAACTGTCTAGATTCAACAACCCTAGTCATGGAATCGAAGCTATTTCGCAGAATAGCGATGCAAAGTACGATCGCGAGCAGATTCTACTACACGAGTAGGACTAGGAAGCCCAGTCTCTACACTAAAATCAGCCCAATGGGGAGCCCCAGCACCAGCGTGGTAACTGAGCTCGAGGATTGGGTCTATAAGGGGAACAAGATCAGTGTCGGCGAGCTTCAGCGCATCGTTCGAGATCTTCGCAAGCGCAGGAGGTTCACCCAAGCCCTAGAGGTATCTGAGTGGATGAATAAGAATGGTGTATGCATATTTTCATCCTCCGAACATGCTGTGCATTTGGATCTGATGGGAAAAGTTCATGGATTTCCTTCTGCTGAAGGCTATTTTAATAGCTTGAAGGAAGAAGATAAAAATAACAAGACATATGGTGCTCTCTTGAATTGCTATACACGGCAGCAACAAACTGAGAAGGCCCTCTCCCATCTGCAGAAAATGAAACAGTTGGGGTTTGCTTCATCTCTAAGTTACAATGATATTATGTGTCTATACACCAACATTGGTCAGGTTGAGAAGGTCCCTGATGTTCTGATCGAGATGAAAAAGAACAAAGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATGCTTTTGGTGCGAGGTCTGATATTGATGGAATTGAAAGAACACTAAAAGAGATGGAAAACCAATCTCACATTATCATGGACTGGAACACTTACGCTGTTGTGGCTGATTTCTATATAAAAGCAGCACTTACAGGTAAGGCAGTTGATGCCTTAAAGAAAGCAGAGGAGAGGCTGGATAAGAAGGATGGTCTTGGTTACAATTTTCTTATTTCTCTTTATGCTCGTCTTGGAGACAAGACTGAGGTCATCAGATTATGGGAACGGGAGAAGAGTGATTGCAAGAGGTGCATAAACAGAGATTTCACCACCATGTTAGAATCTCTGGTAAGGCTTGGTGAGCTGGATGAAGCTGAGAAAATATTGAAGAACTGGGAGTCGTCTGGCAATTGTTATGATCCTCGCGTCCCAGATGTTGTCATCAGTGGATACTCAAAAAATGGTTTGCATGAGGAAGCAGAAATCATGCTGAAAAACTTACAAAAGAGGGGGAAGTCGACCATGGCAAACAGGTGGACTGAAGTGGCAGGGGGATACCTTCGTAAGGGTGAGATGGAGAAAGCATATGATTGCTTTAAAGAAGCCCTACAGGCGGAAAATAAAGAATGGAAGCCGAATCCCAGGGTGTTCCCGGGCATAGTTAATTGGCTTGGTGATAACGGAAGTGTTGAAGAAGTAGAAGCCTTGGTGGGTTCATTGAGAAATTTTGTCCCGGTAAACAAACGAATGTACCACGCCCTCATCAAGGCTTTTGTGAGACATGGAAAAGAGGTAGATGGGCTTTTGGATCGTATGAAGAAAGATAACATTGATCAAGATGAAAAAACGAAAGAAATTCTTGATATGAGGAAGCCGTAG 1791 0.4355 MQGFKKVSSKRWEFKQEKFKRGCKNMLAEITRKKCEASVFPSYLKSCCEENAAASCAGDEQSNNHELLLQQNQDLKKQNQHLQSQIAHFKQLQTSVVNCLDSTTLVMESKLFRRIAMQSTIASRFYYTSRTRKPSLYTKISPMGSPSTSVVTELEDWVYKGNKISVGELQRIVRDLRKRRRFTQALEVSEWMNKNGVCIFSSSEHAVHLDLMGKVHGFPSAEGYFNSLKEEDKNNKTYGALLNCYTRQQQTEKALSHLQKMKQLGFASSLSYNDIMCLYTNIGQVEKVPDVLIEMKKNKVLPDNFSYRICINAFGARSDIDGIERTLKEMENQSHIIMDWNTYAVVADFYIKAALTGKAVDALKKAEERLDKKDGLGYNFLISLYARLGDKTEVIRLWEREKSDCKRCINRDFTTMLESLVRLGELDEAEKILKNWESSGNCYDPRVPDVVISGYSKNGLHEEAEIMLKNLQKRGKSTMANRWTEVAGGYLRKGEMEKAYDCFKEALQAENKEWKPNPRVFPGIVNWLGDNGSVEEVEALVGSLRNFVPVNKRMYHALIKAFVRHGKEVDGLLDRMKKDNIDQDEKTKEILDMRKP 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1721 596 Gene3D Tetratricopeptide repeat domain 509 592 IPR011990 GO:0005515
Lele15g1721 596 Gene3D Tetratricopeptide repeat domain 399 508 IPR011990 GO:0005515
Lele15g1721 596 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Lele15g1721 596 Gene3D Tetratricopeptide repeat domain 167 376 IPR011990 GO:0005515
Lele15g1721 596 SUPERFAMILY TPR-like 237 516 IPR011990 GO:0005515
Lele15g1721 596 Pfam PPR repeat 487 505 IPR002885 -
Lele15g1721 596 Pfam PPR repeat 378 400 IPR002885 -
Lele15g1721 596 Pfam PPR repeat 413 440 IPR002885 -
Lele15g1721 596 Pfam PPR repeat 450 475 IPR002885 -
Lele15g1721 596 Pfam PPR repeat 237 266 IPR002885 -
Lele15g1721 596 SUPERFAMILY TPR-like 336 542 IPR011990 GO:0005515
Lele15g1721 596 Coils Coil 65 92 - -
Lele15g1721 596 FunFam Pentatricopeptide repeat-containing protein mitochondrial 166 376 - -
Lele15g1721 596 TIGRFAM PPR: pentatricopeptide repeat domain 237 266 IPR002885 -
Lele15g1721 596 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Lele15g1721 596 TIGRFAM PPR: pentatricopeptide repeat domain 413 443 IPR002885 -
Lele15g1721 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Lele15g1721 596 Pfam PPR repeat family 269 314 IPR002885 -
Lele15g1721 596 PANTHER OS12G0527900 PROTEIN 74 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1721 Lele-ChrLele15 10294014 10299108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1721 135 579 EF-hand Containing Proteins AT1G02150 33.772 5.22e-84 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1721 15 10294014 10299108 Lele15g1721 15 10294014 10299108 ECH
Lele15g1721 15 10294014 10299108 Lele16g1760 16 10303011 10305158 ECH
Lele13g0762 13 19507514 19514046 Lele15g1721 15 10294014 10299108 hybridization
Lele14g0649 14 17848808 17850967 Lele15g1721 15 10294014 10299108 hybridization