Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1713 ATGGCGAGTCGGTTCGGGTCCGCTCAGACATCCATGATCGTCACGAACACGCCGTCGCAGGACCTCGCTCTTACCAATCTTGCCTTCTGCTCACCCTCTGATCTTCAGAACTTCGCTGTCCCGGGTTTCAAAAATGTCTTCCTCGCTCTGTTTGGGGACTCCTTCCGTCGGTGTGCCAAAGTTTCTGCTGCTGAGTCGATACCTGTGAGCAGATTCGTTCCACCTGACAATTTCAACCTGGCAATGTTAACCCTTGAGTTGGACTTCATCAAAAAGGGAAGTAAAAGTGAACAGATTGATGCAGTTCAGCTGGATTCAACAGTCTTTGAACACAGATATACTTTTATGCAGGTCATGACTGCGGGGCAGAAAGTGTTGTTTGAGTATCATGGAAATAATTATAGTTTCACAGTCTGTCAAGCTGTTGTTGAGGGTCAAGATAAATCTAATTCCGTTGAAAGAGGGATGCTATTGGATGACACATACGTTGTATTTGAAACATCACGTGATAGTGGAATAAAGATTGTCAATCAGCGTGAGGCTGCCACAAGCAACATTTTTAAGCAGAAAGAGTTCAATCTTCAGTCATTGGGTATTGGGGGTTTGAGTGCAGAATTTGCTGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACTTCTAAGCTAGGGATTAAGCACGTGAAGGGCATGCTACTTTATGGACCTCCTGGGACTGGAAAAACTCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATCGTAAATGGTCCTGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAGAAGAATGTGAGGGACCTATTTGCTGATGCTGAAAGGGATCAGAAGACTCTAGGGGATGAAAGTGAATTGCATGTCATAATTTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGCACAGGAGTTCATGATAGTATTGTAAATCAACTTCTCACTAAGATAGATGGTGTGGAATCGCTGAATAATGTTTTACTTATTGGAATGACCAACAGAAAGGACATGCTGGATGAAGCTCTTATGAGACCGGGCCGACTAGAAGTCCAAGTTGAGATAAGCCTTCCTGATGAAAATGGCCGATTGCAGATTCTTCAAATTCATACTAACAAGATGAAGGACAATTCCTTTTTATCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTCGAACCAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAGAGTGCAGTGTCATTTGCTTTAAATAGACAACTTAGTCTAGATGATCTCACCAAGCCAGTGGAGGAAGAGAATATCAAGGTTACAATGGACGATTTTTTGAATGCACTTCATGAAGTTGTTCCTGCATTTGGAGCTTCAACTGATGACCTTGAAAGATGCAGACATAAGCACATTTACCAAAGAGCTATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGCCCTAGTGGCAGTGGTAAAACTGCACTTGCAGCTAGTGTTGGCATTGACAGCGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTCTCCATGAAAGCACTAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGCGTCATTATTCTTGATGACATTGAGAGATTGTTGGAGTATGTGGCCATTGGTCCACGGTTTTCAAATTTGATTTCTCAGACACTACTGGTCCTGCTAAAACGGCTTCCTCCAAAGGGGAAAAAGCTCCTGGTTATTGGTACAACAAGTCAACTGATTTTCTTGGACTCAATTGGATCTTGTGATGCTTTCTCGGTCAGTTACCATGTTCCTACATTGAACACAAACGATGTCAAGAAGGTTCTAAAACAGTTGAATGTCTTCGCTGAGGGTGATGTTGATGATGCTGCGGAGGCCTTGAATGATATGCCTATCAAGAAGCTATACACGTTGATTGAGATGGCAGCCCAAGGTGAACATGGTGGATCTGCAGAAGCAATCTATTCTGGCAAAGAGAAGATTCAGCTATCTCACTTCTATGATTGCCTTCAGGATGTTGTCCGAGTATGA 2139 0.4245 MASRFGSAQTSMIVTNTPSQDLALTNLAFCSPSDLQNFAVPGFKNVFLALFGDSFRRCAKVSAAESIPVSRFVPPDNFNLAMLTLELDFIKKGSKSEQIDAVQLDSTVFEHRYTFMQVMTAGQKVLFEYHGNNYSFTVCQAVVEGQDKSNSVERGMLLDDTYVVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAERDQKTLGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALMRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLSPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVVPAFGASTDDLERCRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAASVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSQLIFLDSIGSCDAFSVSYHVPTLNTNDVKKVLKQLNVFAEGDVDDAAEALNDMPIKKLYTLIEMAAQGEHGGSAEAIYSGKEKIQLSHFYDCLQDVVRV 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1713 712 Gene3D - 8 50 - -
Lele15g1713 712 CDD AAA 233 376 - -
Lele15g1713 712 PANTHER VESICULAR-FUSION PROTEIN NSF 10 711 IPR039812 GO:0016887|GO:0035494
Lele15g1713 712 Pfam ATPase family associated with various cellular activities (AAA) 506 614 IPR003959 GO:0005524|GO:0016887
Lele15g1713 712 Pfam ATPase family associated with various cellular activities (AAA) 235 375 IPR003959 GO:0005524|GO:0016887
Lele15g1713 712 FunFam Vesicle-fusing ATPase 377 464 - -
Lele15g1713 712 FunFam Vesicle-fusing ATPase 76 175 - -
Lele15g1713 712 Gene3D - 184 376 IPR027417 -
Lele15g1713 712 SUPERFAMILY ADC-like 11 76 IPR009010 -
Lele15g1713 712 FunFam Vesicular-fusion ATPase SEC18 187 377 - -
Lele15g1713 712 Gene3D - 377 464 - -
Lele15g1713 712 SMART AAA_5 501 622 IPR003593 -
Lele15g1713 712 SMART AAA_5 231 378 IPR003593 -
Lele15g1713 712 Pfam AAA+ lid domain 402 457 IPR041569 -
Lele15g1713 712 Gene3D - 475 634 IPR027417 -
Lele15g1713 712 FunFam vesicle-fusing ATPase isoform X1 476 634 - -
Lele15g1713 712 CDD AAA 495 613 - -
Lele15g1713 712 Gene3D - 75 175 - -
Lele15g1713 712 SUPERFAMILY Cdc48 domain 2-like 75 180 IPR029067 -
Lele15g1713 712 ProSitePatterns AAA-protein family signature. 346 364 IPR003960 GO:0005524|GO:0016887
Lele15g1713 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 475 IPR027417 -
Lele15g1713 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 676 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1713 Lele-ChrLele15 10227218 10236475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1713 199 450 Calmodulin-binding Proteins AT3G56690 33.858 3.61e-30 125