Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1706 ATGATGGAGACTATTGCAGTTGCAGGTACTTCGTCTTCGTCTAGAGGAGATAGGAAAGTCATAGAGAGGAACCGAAGAAGCCAAATGAGGGCTCTTCACTCCAAGCTCAGCTCACTCGTCCCTCGTCAAACCTCCAAGGTGATTTCGCAGTCGGATGTGTTGGGTGAAGCCGCCAACTACATTAAGAAGCTTCAGATAAAGTTGGAGAAGATGAAGGACAAGAAACTCAGCCTCATGGGAATCAACAATAACGAGACAAATAATAGTAATGGGAGCCGCCTAACTTATAATAATAATAATAACGGAGGAGTGATTATGGGGTCGAAATCGCCCAAAGTTGAGATTCACCAAATGGGTTCAACATTAGAAGTTTCTGTGATTACTGGGTTAGATTGCCAGTTCATCTTCAACGAGTTCATTCGCATTCTTCACGAAGAACAAGTTGACATTCTTAACGCCAACTATTCAGTCGTTCAAGACACTGTTTTTCATACCATCCACTGTCAGATAGGAGAATGTGGTAACAGAGGTGGGAGGATATCGGAGAGATTGAGGAGGTTTGTGTATGGTTCTGGCGCTTTTGAAGAGAATAATGGCAATGGCTGCACTCTGGTTTTCTGA 621 0.4348 MMETIAVAGTSSSSRGDRKVIERNRRSQMRALHSKLSSLVPRQTSKVISQSDVLGEAANYIKKLQIKLEKMKDKKLSLMGINNNETNNSNGSRLTYNNNNNGGVIMGSKSPKVEIHQMGSTLEVSVITGLDCQFIFNEFIRILHEEQVDILNANYSVVQDTVFHTIHCQIGECGNRGGRISERLRRFVYGSGAFEENNGNGCTLVF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1706 206 Gene3D - 8 92 IPR036638 GO:0046983
Lele15g1706 206 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Lele15g1706 206 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 189 IPR015660 -
Lele15g1706 206 Coils Coil 54 74 - -
Lele15g1706 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 78 IPR036638 GO:0046983
Lele15g1706 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 64 IPR011598 GO:0046983
Lele15g1706 206 SMART finulus 19 70 IPR011598 GO:0046983
Lele15g1706 206 MobiDBLite consensus disorder prediction 1 20 - -
Lele15g1706 206 MobiDBLite consensus disorder prediction 1 15 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1706 Lele-ChrLele15 10180486 10181398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1706 8 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.622 4.38e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele15g1706 HLH 1.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0777 13 19636179 19637011 Lele15g1706 15 10180486 10181398 hybridization
Lele14g0665 14 17966514 17974530 Lele15g1706 15 10180486 10181398 hybridization