Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1696 ATGCCAGCACAGAAGCGCTTGTTCGACGCACCAGAAGAGGGCGCTTTACACGGCGAGAGGAACCACCATGAGAAGCCAGAAGATGGATTGGAATCCGATCGAAGCCCTTCGGAGAGCACCGGCGACAAAGAAGAGTTTGTTGTCATAAAATTGGCAGATATACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGAAAAACAAGAACCGTAATGGAATGCCTGCACCGCTTTTGCAGAGAGTGTATAGACAAATCAATGCGCCTTGGCAACAACGAGTGCCCTGCTTGTCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTGCTGCTCTCTATCCAAATATAGACAAGTATGAGCAGGAGGAATTGGCTCTGCATGAAGATGAAAAAGCTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGACTCTTCAACGACAGGCAGAAGCACTGGGTAAAAAACGCAATACCAAAGCGATTACAAGGAGGTCACAAGGTAACTATCGAACTTCGCATGTGAGGGCAAGAAGAAATTGTAGAAGTACGGTTGAACTTCAGGGATCTGATGACACAGAGGACATGAATGATGATGATGGGGCCAAGGGTTCTTCTGGTGATGAGCTGATAGAAATCAGGTCAAAAAGATGTAAAAGAGGGGCAGAAGCACAATTTCCTCCCCATTCTGCAACCACTGTTGCAGATGGTGCAAGTGATGAAAATGCTCCTGAAGTGAGTAGAGAATTCTTGAGTCCTTCTAGTACACTTGCCTGGGGAAAAAATGGTCACCGCAGTCACACCCGAGTCAATGGCAAGAGTGCCAGAAATAGTCGCCTTGCCAAATTGATTGATAATCTCCGTGGCTTGGAAGAAAACGATGATGAGTTGGGTGTCTGCCTCATGCTTGTGCCTTTTGATGAGAAAGGAACACCAAGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACATTGTCTGTCAGGCACCTCTGCCAGTACGTTGCACTTCAAACAGCTGTACAGGCTGATGAGGTTGAGATATGCTTGGTAAAAGAGCAGCAAGCCAACATTATTAGAGCTGCAGGCTCAGTAGATACATGCAAAGATAATTTGCAAGTGTTGAGAGCGCAGGAAACTTTGGCCGAACTTAAACCTGATGATTTTAGCTGTGGCCATCTGCTTATGGCATATAAGAGGAGGCTGGTGAACTCAACTGCGGCTAGCTTGAGGTGA 1260 0.4675 MPAQKRLFDAPEEGALHGERNHHEKPEDGLESDRSPSESTGDKEEFVVIKLADIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIDKYEQEELALHEDEKARNKQIQESIAQTLQRQAEALGKKRNTKAITRRSQGNYRTSHVRARRNCRSTVELQGSDDTEDMNDDDGAKGSSGDELIEIRSKRCKRGAEAQFPPHSATTVADGASDENAPEVSREFLSPSSTLAWGKNGHRSHTRVNGKSARNSRLAKLIDNLRGLEENDDELGVCLMLVPFDEKGTPSLQQPYLCCRPTLSVRHLCQYVALQTAVQADEVEICLVKEQQANIIRAAGSVDTCKDNLQVLRAQETLAELKPDDFSCGHLLMAYKRRLVNSTAASLR 419
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1696 419 PANTHER OS11G0578200 PROTEIN 19 409 IPR044592 -
Lele15g1696 419 SMART ring_2 60 99 IPR001841 -
Lele15g1696 419 MobiDBLite consensus disorder prediction 10 42 - -
Lele15g1696 419 MobiDBLite consensus disorder prediction 208 232 - -
Lele15g1696 419 MobiDBLite consensus disorder prediction 1 42 - -
Lele15g1696 419 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Lele15g1696 419 Coils Coil 137 157 - -
Lele15g1696 419 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Lele15g1696 419 SUPERFAMILY RING/U-box 47 131 - -
Lele15g1696 419 CDD RING-HC_RING1_like 60 100 - -
Lele15g1696 419 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Lele15g1696 419 MobiDBLite consensus disorder prediction 159 250 - -
Lele15g1696 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 130 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele15g1696 Lele-ChrLele15 10070064 10074132 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1696 58 185 C3H Transcription Factor Family AT2G30580 29.197 2.04e-07 50.8
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0786 13 19715073 19720179 Lele15g1696 15 10070064 10074132 CCT
Lele14g0676 14 18071951 18077006 Lele15g1696 15 10070064 10074132 CCT
Lele15g1697 15 10076638 10081742 Lele15g1696 15 10070064 10074132 CCT
Lele16g1732 16 10069299 10074984 Lele15g1696 15 10070064 10074132 CCT
Lele13g0800 13 19796195 19797675 Lele15g1696 15 10070064 10074132 CCT
Lele14g0690 14 18165235 18167845 Lele15g1696 15 10070064 10074132 CCT
Lele15g1679 15 9999250 10001395 Lele15g1696 15 10070064 10074132 CCT
Lele16g1715 16 9985100 9987261 Lele15g1696 15 10070064 10074132 CCT
Lele13g0788 13 19729397 19730209 Lele15g1696 15 10070064 10074132 hybridization
Lele14g0677 14 18082646 18088632 Lele15g1696 15 10070064 10074132 hybridization