Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1688 ATGACTTCTTCGTCGTCTTCGCCTTCTTCTTCTTCCATGTCGCGCGAGGGTCACTACAGAGGGGTGAGAAAGCGACCGTGGGGTCGATACGCCGCCGAGATTCGCGACCCGTGGAAGAAAACGCGCGTCTGGCTGGGCACGTTCGACACTCCGGAAGAGGCGGCTCTGGCCTACGACGGTGCTGCACGTTCCCTCCGTGGTCCGAAGGCCAAAACCAACTTCCCTCCGGCTCCGGTGGCTACAGGAGGTCTCTCCCTCGACCTCAACGCCCCGACCTCTGATCATCGTTGGACCCCCATCCCCTCCGGTCGCCTCGTGCTGAACGAGCTTCTCCATGCGGGCGTACTCAAGGACATGTCTTTCGATCATCCTCCGCCTTCGCCGGCAACTCCCATTGCCGCTATGGTTCACAACCGGCGTGAGGGTTCCGTCTCCGTGGACGGTGGTCATCATCCGGTGCCTGAGAGCTCTCCCCCGGCTTCATTTCTCGGTCTTGTTCGGCGAGGCCTGCCGATCGACCTGAACGAACCTCCTCCCGTGTGGCCTTAA 549 0.6175 MTSSSSSPSSSSMSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGPKAKTNFPPAPVATGGLSLDLNAPTSDHRWTPIPSGRLVLNELLHAGVLKDMSFDHPPPSPATPIAAMVHNRREGSVSVDGGHHPVPESSPPASFLGLVRRGLPIDLNEPPPVWP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1688 182 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Lele15g1688 182 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Lele15g1688 182 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Lele15g1688 182 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lele15g1688 182 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lele15g1688 182 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 108 - -
Lele15g1688 182 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Lele15g1688 182 MobiDBLite consensus disorder prediction 141 160 - -
Lele15g1688 182 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Lele15g1688 182 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g1688 182 MobiDBLite consensus disorder prediction 1 16 - -
Lele15g1688 182 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Lele15g1688 182 FunFam Ethylene-responsive transcription factor 2 18 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1688 Lele-ChrLele15 10046437 10046985 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1688 9 181 AP2-EREBP Transcription Factor Family AT1G28360 46.535 9.45e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele15g1688 AP2 1.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1688 15 10046437 10046985 Lele15g1688 15 10046437 10046985 ECH
Lele13g0792 13 19749744 19750286 Lele15g1688 15 10046437 10046985 hybridization
Lele14g0682 14 18122097 18122642 Lele15g1688 15 10046437 10046985 hybridization