Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1673 ATGACGTCTAAATTGAACATTTTAAGCTTATATGAAATTGAACAGTTGACAAAATCTCATGACCAAGTTTTGACCTTCAGAAGACGAAGAAGTATGGGTGTGGATTATTATAAGATTCTTCAGGTTGACAAGAATGCCACAGGGGAAGATCTGAAGAAAGCTTACCGAAAGCTTGCCATGAAATGGCACCCTGATAAGAACCCAAACAATAAGAAAGACGCTGAGGCCAAATTCAAACAAGTCTCAGAAGCCTACGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCAGTATGGAGAAGAAGGGCTCAAAGGGCAGGTGCCACCACCAGATGCTGGTGGGGCTTCATTCTTCCAAACTGGAAGTGGTCCAACGACGTTTAGGTTTAACCCCAGAAACGCAGACGACATTTTTGCTGAATTTTTCGGTTTTTCGAGCCCATTTGGTGGAATGGGCGGCGGCGGCGTGAGAGGTGGCACGAGGTCCTTTGGTGGAATGTTTGGGGATGATATATTCAGCTCATTTGGAGAAGGCAGGCCTATGAGTCAACAAGGTCCACGGAAGGCGCCTCCTATTGAAAACATATTGCCTTGCAGCCTTGAGGAGCTCTATAAAGGCACTACCAAGAAGATGAAGATCTCAAGGGAACTTGTAGATGCAAGTGGAAAAACTTTACCAGTGGAGGAAATCTTAACCCTTGAAATCAAACCGGGTTGGAAGAAGGGGACGAAGATCACGTTCCCAGAGAAAGGGAACGAACAACCAAATGTGATCCCTGCAGATCTGATATTCATCGTCGATGAGAAACCTCACAGTTTGTTTACAAGGGATGGTAATGATCTGGTAGTGACACAGAAGATAACACTTGTAGAAGCTCTAACAGGCTACACTGTACATCTCACAACGTTGGATGGTAGGACTCTGAACATTCCCATAAACAACGTGATACATCCAACCTATGAAGAGGTTGTCCCCAAGGAAGGCATGCCAATTCCAAAAGAACTTTCAAGGAGGGGCAACCTTAGGATTAAGTTCAATATCAAATTCCCAACAAGGTTGACATCGGACCAGAAAGCTGGAATTAAGAAACTTTTAGGGTCATAA 1110 0.4414 MTSKLNILSLYEIEQLTKSHDQVLTFRRRRSMGVDYYKILQVDKNATGEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQVSEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGASFFQTGSGPTTFRFNPRNADDIFAEFFGFSSPFGGMGGGGVRGGTRSFGGMFGDDIFSSFGEGRPMSQQGPRKAPPIENILPCSLEELYKGTTKKMKISRELVDASGKTLPVEEILTLEIKPGWKKGTKITFPEKGNEQPNVIPADLIFIVDEKPHSLFTRDGNDLVVTQKITLVEALTGYTVHLTTLDGRTLNIPINNVIHPTYEEVVPKEGMPIPKELSRRGNLRIKFNIKFPTRLTSDQKAGIKKLLGS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1673 369 CDD DnaJ 35 90 IPR001623 -
Lele15g1673 369 ProSiteProfiles dnaJ domain profile. 35 101 IPR001623 -
Lele15g1673 369 Pfam DnaJ domain 35 98 IPR001623 -
Lele15g1673 369 SUPERFAMILY Chaperone J-domain 34 156 IPR036869 -
Lele15g1673 369 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 32 367 - -
Lele15g1673 369 FunFam DnaJ subfamily B member 13 34 154 - -
Lele15g1673 369 Gene3D - 193 271 - -
Lele15g1673 369 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 279 IPR008971 GO:0006457|GO:0051082
Lele15g1673 369 FunFam DnaJ subfamily B member 13 273 353 - -
Lele15g1673 369 ProSitePatterns Nt-dnaJ domain signature. 78 97 IPR018253 -
Lele15g1673 369 CDD DnaJ_C 192 355 - -
Lele15g1673 369 Pfam DnaJ C terminal domain 197 352 IPR002939 -
Lele15g1673 369 SUPERFAMILY HSP40/DnaJ peptide-binding domain 276 361 IPR008971 GO:0006457|GO:0051082
Lele15g1673 369 PRINTS DnaJ domain signature 37 55 IPR001623 -
Lele15g1673 369 PRINTS DnaJ domain signature 55 70 IPR001623 -
Lele15g1673 369 PRINTS DnaJ domain signature 73 93 IPR001623 -
Lele15g1673 369 PRINTS DnaJ domain signature 93 112 IPR001623 -
Lele15g1673 369 FunFam Dnaj homolog subfamily b member 190 271 - -
Lele15g1673 369 Gene3D - 273 353 - -
Lele15g1673 369 SMART dnaj_3 34 93 IPR001623 -
Lele15g1673 369 Gene3D DnaJ domain 33 154 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1673 Lele-ChrLele15 9973430 9976980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1673 30 100 C2H2 Transcription Factor Family AT1G74250 37.333 1.62e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1673 15 9973430 9976980 Lele15g1673 15 9973430 9976980 ECH
Lele13g0806 13 19822234 19823784 Lele15g1673 15 9973430 9976980 hybridization
Lele14g0695 14 18191466 18192481 Lele15g1673 15 9973430 9976980 hybridization