Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1672 ATGGAGGCCGAGTCTGTTTCAGACGGGGAGAACAATCGGAAAAGGGATGCCGCTGATGATTACAATGACAACAATAATGGAAGTAACAAAAAAATTGTAAATTCCAATGAAGGGCAGAGCAAGCCCAAGCGTCAGATGAAGACTCCTTTCCAGCTTGACGCCCTAGAGAAAGCTTATGCTTTGGAGATGTACCCGTCGGAGGCGATGAGGGCAGAACTGTCACAGAAGTTGGGGCTGTCGGATCGGCAATTGCAGATGTGGTTCTGCCATAGGAGGTTGAAAGACAAGAAGGATGTGCCTAAGTCTTCAAGAAAGGCGCCACTGCAGTTGCCCGCTTCACCGACGGACGACTTGAGGATGGAGACTGAACTTGCCAATGATTATGGATCCGGGTCGGGTTCGGGCTCAAGCCCGTTCACGCGTTCAGAGTTGAGGAATGTGGTACCTGGGGGTGTTCCTGGGTACTATGAGTCACAGCAGGCTCTTACGGAGCTCAGAGCAATTGCTTGTGTGGAGGCACAATTAGGAGAACCCTTGAGGGAGGATGGACCTATTTTAGGAGTTGAGTTTGATCCATTGCCGCCAGATGCATTTGGAGCACCTATAGTTACTGAGCAGCAGAAGCGGCCTAGTCTTGGCTTTGATAGTAAAGTCTATGAAAGACATGACGTTAGACCAAATAAGGATATGACAAGGACTTTCCATGAATATCCATTTCTCCCAAACCACGCCAGTATTAGATCTGATGCTTACGGACAATTGACACAATCTCATTTGCTTGATCCGATGGATGGTCTGGCAAGAACGTCACTTTTTGTAGTAAAAAATGAACAGCTTCCCAGGCTCCGTGCTGCCCAAGGTCATTCGTCACGTGTTCGTGGTTCATCTTTACATGATAAGCCAGGTCTTCCATTTCCATCACCCCCTCGTGATGATGATGGCCCCTCTCAAAGGGAATCTTACACAAAGCTAAATATTGGAATCAACTCTCACTTTACTGCTCACCCTAGTGCTGGACCAGAAAACCCTTATGCTGCCGTGGGTGGACAAGTTTTCCATGGCGATGCAATATTACGGGTGGACAGGAAACGAAAGAGTGATGATTCTAGAGCTGCAAGAGAAGCTGAAGCCCATGGGATGAGGATCCAGAAGGTGATAGAGAAACAAGATAACATTAGGCGAAAGAATGAAGAAAGAATGAGGAAAGAGATGGAGAGGCAAGATCGTGAACGAAGGAAAGAAGAAGAGAGGTTGATGCGTGAGAGACAAAGAGAAGAAGAAAGAACAAAGCGTGAGCAAAAGCGTGAAATTGAACGGAGGGAAAAGTTTCTGATGAAAGAAAATTTAAAAGCTGAGAAAAGGAGGCAAAAAGAAGAGCTTCGAAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCTCTTGAGAAGGCAGTTGCCCGCAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGACGAACAACTGGAATTGATGGAGTTGGCTGTGGCAAGCAAGGGACTTCCCTCAATTATAAATCTTGATCTTGACACTTTGCAAAACCTTGATATATTTCGGGATTCATTATGCATTTTTCCACCTAAGAGTTTAAAGCTGAAAAAACCATTAGCCATCCAACCCTGGATCAAATCTGAGGAGCATGTTGGCCACCTTCTCATGGTTTGGAGATTTCTGATTACATTTGCAGATGTCCTCGAGTTGTGGCCTTTTACTCTTGATGAGTTTTTGCAGGCATTTCATGACTATGATTCAAGATTATTTGGTGAAATACATGTTGCTCTTCTCAAGGTGATAATAAAGGACATTGAAGATGTTGCAAGGTCGCCTACAGGATTAGGTACAAACCAGAATGGGGCTGCTAATCCTGGGGATGGCCATCCAGAGATTGTAGAAGGGGCATATGCATGGGGCTTTGATATAAGAAATTGGCAGAAGCACTTGAATCAATCAACATGGCCTGAAATTTTCCGACAGTTAGCATTGTCTGCAGGGTTTGGACCACGGTTGAAGAAAAGAAATATCTCATGGTCATATGCAAATGATAAAGACGAGCTGGGTAGAAGTTGTGAAGACATCATCTCCACACTTCGCAATGGTTCGGCAGCTGAAAATGCGGTGACAAAAATGCAAGAGAAAGGTCTATTAGCCCCTCGGAGAAATAGGCACCGGTTGACTCCTGGAACAGTCAAGTTTGCAGCATTTCATGTTTTGTCTCTTGAGGGTAGCAAGGGCCTGACAGTACTAGAGCTTGCAGAGAAAATTCAGAAATCTGGACTTCGGGACCTGACAACTAGCAAGACTCCTGAGGCATCAATTTCTGTTGCTTTGACTAGAGATGCTAAGCTTTTTGAAAGAATAGCTCCCTCAACATATCGAGTTCGTGCTGCATACAGAAAAGATCCTGCTGATGCGGAGGCCATTCTTTCAGATGCTAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCCTGCTGTTGAAGATGCTGATGATGTTGAAAGAGAAGAAGAGTCGGAAAGTGATGAAGTTGATGAGGATCCTGAAGCAGATGATTTAGTAAATCCCCTAAGTGATAACAAAACATCTGAACAGTATGATGACCTGAACAATTGCTCTACAAATGGAAGAGAGAATATGAGCCATGACATGGAACTTATTCAAAATGAGTTTGGCAAGGATCTTCCTTGTGTTCCTGAGAATTGTTCCAAGGATGCTGATTGCCCAAGTGCCATCACTGGACAACGGGATGTTGTTGAAGATTTGAATACTGGAAATCCTGAAGATAATATGGAAATTGATGAAAGCAAGTTTGGAGAGTCATGGGTTCAAGGTCTTACAGAAGGAGATTATTCTGACCTTAGTGTAGAAGAACGTCTTAATGCTCTAGTAGCATTAGTTGGGGTTGCAAATGAAGGGAATTCAATACGTGTTGTTCTTGAGGACCGTTTGGAGGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGGCAGAAAGATGATAATTCTAATAAATTAGATTTACCATCTCTTACTGTAAATAAAGGTGAGGCACAATATACGGGCCCTGCTGCGGAGGGAAACCAGAGCCCATTGCTTGACATCAATATTAATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAAGTTGTTGGTGCACAGAACACGCCTATTGAAAAGCCCTCAGTTGTTCAAGATCTCGTTATAAGTCCAGACAATCCACAGATTCTATCTGCACATGCTTCAAAAAGGTCTCGTTCACAGTTGAAGTCCTATATTGCACATATAGCAGAAGAGATGTATGTATATAGGTCCTTGCCCCTTGGTCAAGATCGGAGACGTAACCGTTATTGGCAATTCGTTGCATCTGCTTCCAGCAGTGATCCTGGTGCTGGCAGGGTCTTCGTTGAATTACATGATGGCAGTTGGAGGCTTATTGATTCAGAAGAGGACTTCGATGCACTTTTGACATCCCTTGATTCGCGGGGAATAAGGGAATCTCATTTACGCTTAATGTTGCAGAAGATTGAGAATTCCTTCAAGGAAAATGTTCGAAAGAATGCTCAATTTAGTAAAGTTTCTATAAAAGCAATTAAAAATGAAGCTGATGAAGTAGAATTGGTTCCTGAATTCCGTGCTGGATCAGACAGTTCTAGCAGTACACTTTGTGGTTTGAATTCTGACAGTACATTGGAAACTTCATCATCCTTTAAAATTGAGCTGGGGAGAAGTGAGGGTGAAAAAAAAGCCGCCTTGACCAAGTATCAAGATGTTCAAAAGTGGATATGGAAAGAATGTTATAATTCATCAACATTATATTCAATGAAATATGGTCAACGGAGATGCAAACCCCTGCTGGAAATATGTGATATGTGTTTGAATCCATATTTCTTTGAAGATTACCATTGTAACTCTTGCCACCATACTTTTGCAGCTAATAATGGATTGAATTTTTCTAAACATGCATTTCAATGTGGAGAGAAGGTAGATTCCAAAGGTCTTTGCACTTGGGATTCTTCTCTTCCCTTGCAGATAAGGTTGCTCAAGGCCTTGTTGGCTTGTATTGAGGCTTCTGTGCCTCTTGAAGCATTTAAATCAATTTGGACAGAAGAGAATAGGAAGCAGTGGGGTGTGAAGTTGAGCAAATCATCTACAACTGATGAACTCTTACAGTTATTGACCTTGTTGGAGAGAGCAGTACAGCGAGACTTTCTGTCATCGAACTTCTCTACAACAGAAGAAATGTTGGGATCAAACTGTATGCCAGATGATGCTGTAAATGCTTCTACTGATACTGAATCAGTTCCTGTGCTGCCATGGGTCCCACAAAGCACTGCAGCTGTGTCATTGAGAATATTTGAGTTTGATGCATCCATCAGTTACATACCGGCTGAGAAACCTGAGCTACCTTGTGAGGAGAAAGAAGTGAGGGAATACATGCTTCCTTCACGATATGCTCCCTTCAAATCTGGTAGAGCTATTGAATCAGCAGAATTAGACCATGATGAATTCATCAAGGAAGACAAATCTTATAAAAGTGCCCGAGGCAGCAATAAACGTGGACGAGGATCTCATGATCAGGGGCGGGGCAAAAAGTTGTCTAGAAGAATGCAAGAGCCAAAACAACTGTCCGGGCGCCGAAATGTTAAAGGCGCTGAAATTTTGGGTCAAGGATTAAAACAGCAGGGGAGAGGGGCACAAGGACAACCTGGTGGACGTGGTCGCCGAACAGTCAGGAAAAGAAGAGTGGAGAAAAGGGCCGTCGTTGAGGACTTATTGCTGGGCCACAAGGTTGGTAGAGAATCATTGAGAAGTTTGGAAGAAGAGGAATGGGATGGCGAGAAGGAATCAAGTCCCATCCAAATGGATGGTGTTGATAATAGTAACAGTGCTGAGGAAGTGGAATCTGACGACAATGGGCAAGCAGTGGAGTATGAGCAAGGAAACTGGGAGGTAGGTTTCAATGGTGATAGTTCCAACAGCAGATGGGATAGGGATTTGGTTGAAGCCAGCGATGAAGAAGTGGTCGGTGCTTCTGAAGATGACAACGGTGTTGAAGAGGTAGAAGAAGAGTTGGAAGAAGATTCAGAGGAAGAGGTTATGAGTGAGGGAGAGGATTCAGATGGTATGGGCAATAGAATGATGGTAAATGAAGAAGGCTCAGACTCAGCTGTCTCTGAGGATTCTTCTGATTAG 5232 0.4344 MEAESVSDGENNRKRDAADDYNDNNNGSNKKIVNSNEGQSKPKRQMKTPFQLDALEKAYALEMYPSEAMRAELSQKLGLSDRQLQMWFCHRRLKDKKDVPKSSRKAPLQLPASPTDDLRMETELANDYGSGSGSGSSPFTRSELRNVVPGGVPGYYESQQALTELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIVTEQQKRPSLGFDSKVYERHDVRPNKDMTRTFHEYPFLPNHASIRSDAYGQLTQSHLLDPMDGLARTSLFVVKNEQLPRLRAAQGHSSRVRGSSLHDKPGLPFPSPPRDDDGPSQRESYTKLNIGINSHFTAHPSAGPENPYAAVGGQVFHGDAILRVDRKRKSDDSRAAREAEAHGMRIQKVIEKQDNIRRKNEERMRKEMERQDRERRKEEERLMRERQREEERTKREQKREIERREKFLMKENLKAEKRRQKEELRKEKEAERRKAALEKAVARRIAKESMELIEDEQLELMELAVASKGLPSIINLDLDTLQNLDIFRDSLCIFPPKSLKLKKPLAIQPWIKSEEHVGHLLMVWRFLITFADVLELWPFTLDEFLQAFHDYDSRLFGEIHVALLKVIIKDIEDVARSPTGLGTNQNGAANPGDGHPEIVEGAYAWGFDIRNWQKHLNQSTWPEIFRQLALSAGFGPRLKKRNISWSYANDKDELGRSCEDIISTLRNGSAAENAVTKMQEKGLLAPRRNRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRAAYRKDPADAEAILSDARKKIQIFENGFPAVEDADDVEREEESESDEVDEDPEADDLVNPLSDNKTSEQYDDLNNCSTNGRENMSHDMELIQNEFGKDLPCVPENCSKDADCPSAITGQRDVVEDLNTGNPEDNMEIDESKFGESWVQGLTEGDYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKVRQKDDNSNKLDLPSLTVNKGEAQYTGPAAEGNQSPLLDININNNEASPSTAENQKVVGAQNTPIEKPSVVQDLVISPDNPQILSAHASKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSSDPGAGRVFVELHDGSWRLIDSEEDFDALLTSLDSRGIRESHLRLMLQKIENSFKENVRKNAQFSKVSIKAIKNEADEVELVPEFRAGSDSSSSTLCGLNSDSTLETSSSFKIELGRSEGEKKAALTKYQDVQKWIWKECYNSSTLYSMKYGQRRCKPLLEICDMCLNPYFFEDYHCNSCHHTFAANNGLNFSKHAFQCGEKVDSKGLCTWDSSLPLQIRLLKALLACIEASVPLEAFKSIWTEENRKQWGVKLSKSSTTDELLQLLTLLERAVQRDFLSSNFSTTEEMLGSNCMPDDAVNASTDTESVPVLPWVPQSTAAVSLRIFEFDASISYIPAEKPELPCEEKEVREYMLPSRYAPFKSGRAIESAELDHDEFIKEDKSYKSARGSNKRGRGSHDQGRGKKLSRRMQEPKQLSGRRNVKGAEILGQGLKQQGRGAQGQPGGRGRRTVRKRRVEKRAVVEDLLLGHKVGRESLRSLEEEEWDGEKESSPIQMDGVDNSNSAEEVESDDNGQAVEYEQGNWEVGFNGDSSNSRWDRDLVEASDEEVVGASEDDNGVEEVEEELEEDSEEEVMSEGEDSDGMGNRMMVNEEGSDSAVSEDSSD 1743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1672 1743 SMART HOX_1 40 102 IPR001356 GO:0003677
Lele15g1672 1743 Pfam HB1, ASXL, restriction endonuclease HTH domain 732 800 IPR007759 GO:0006355
Lele15g1672 1743 ProSiteProfiles DDT domain profile. 550 609 IPR018501 -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 1685 1717 - -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 1520 1594 - -
Lele15g1672 1743 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Lele15g1672 1743 Coils Coil 392 477 - -
Lele15g1672 1743 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1116 1188 IPR028941 -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 1 49 - -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 22 46 - -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 1520 1555 - -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 1616 1631 - -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 828 871 - -
Lele15g1672 1743 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 941 984 IPR028942 -
Lele15g1672 1743 Coils Coil 1690 1717 - -
Lele15g1672 1743 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Lele15g1672 1743 Pfam DDT domain 551 606 IPR018501 -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 98 118 - -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 1616 1743 - -
Lele15g1672 1743 Gene3D - 25 100 - -
Lele15g1672 1743 ProSiteProfiles HARE-type HTH domain profile. 732 801 IPR007759 GO:0006355
Lele15g1672 1743 MobiDBLite consensus disorder prediction 388 434 - -
Lele15g1672 1743 SMART testlast3 550 609 IPR018501 -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g1672 1743 CDD homeodomain 43 97 IPR001356 GO:0003677
Lele15g1672 1743 SUPERFAMILY Homeodomain-like 31 97 IPR009057 -
Lele15g1672 1743 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 1743 IPR044977 GO:0006357
Lele15g1672 1743 MobiDBLite consensus disorder prediction 833 856 - -
Lele15g1672 1743 MobiDBLite consensus disorder prediction 283 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1672 Lele-ChrLele15 9963121 9972214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1672 7 1669 Homeobox Transcription Factor Family AT1G28420 49.426 0.0 1342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele15g1672 WSD 1.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0812 13 19865545 19865997 Lele15g1672 15 9963121 9972214 CCT
Lele14g0703 14 18251604 18252068 Lele15g1672 15 9963121 9972214 CCT
Lele15g1667 15 9927438 9927878 Lele15g1672 15 9963121 9972214 CCT
Lele16g1703 16 9888867 9889331 Lele15g1672 15 9963121 9972214 CCT
Lele15g1672 15 9963121 9972214 Lele13g0801 13 19798710 19799635 CCT
Lele15g1672 15 9963121 9972214 Lele14g0691 14 18168855 18171090 CCT
Lele15g1672 15 9963121 9972214 Lele15g1678 15 9997347 9998297 CCT
Lele15g1672 15 9963121 9972214 Lele16g1714 16 9981296 9984081 CCT
Lele15g1672 15 9963121 9972214 Lele15g1672 15 9963121 9972214 ECH
Lele13g0807 13 19825420 19834510 Lele15g1672 15 9963121 9972214 hybridization
Lele14g0697 14 18197049 18205890 Lele15g1672 15 9963121 9972214 hybridization