Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1668 ATGAAGAAGAATACCAGGAAACTCAGAGAGATGGCATGGTGCAATGAGTCTCAAGATGAGGAAGGGGTACGAATTCAATCAAACAATCCCACAACCTCTGAAACTCGAATCATAACTTGCCCTTCATGCGGACATACCCTAGAATTTCAAGATCAGGGTGACATACTTAACGAATTGCCTGGGCTACCATCTGGGGTGAAGTTTGATCCAAACGAACAGGAGATATTACAACATTTGGAAGCGAAAGTTGAGTGTGATGTTCGTAAGCTTCATCCTCTTATTGATCAGTTCATTCCCACTATTGAAGGAGAAAATGGCATCTGTTATACACACCCAGAAAAGCTACCAGGAGTAAGCAAAGATGGGCAGATTCGGCACTTCTTCCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACTGTTCAGACAACGAAGGAGGAGGAGAAGGCGAAACAAGATGGCACAAAACAGGCAAAACAAGGCCAGTCTTCATTAATGTTCAACTCAAGGGTTTCAAGAAGATACTTGTGCTTTACACAAACTATGGCAGAAAAAGGAAGCCGGAGAAGACGAGCTGGGTGATGCATCAATACCACCTCGGAACAAACGAAGAAGAGAAAGAAGGACAACTCGTGTTGTCCAAGGTTTTCTACCAGACGCAACCTAGGCAATGTGGTTCCTCATCCATTATTATTAAGGATCTTTATGATAATGATAAGAAAACAGCCAACAACGACCAAAGGGGAAGAAGTAATGATCGTGACACGTGCTCTACAATGATACCTACTAAGCATAATAATGGATCCGGTGGTATTTTAGAGTACTACAGTTCTCCTTACATGAGTTATGAGCATGTGGTGGTGGGTCATCATAATAACAACGTTAGAGAAAGTTCACCTCAACTTATTCCAAACTTGGTCGTCCAAGGTGATGTTTCTTCTTTCTTTTCTTTCAGCAATGGATTGAAGCAAACAAAGACAGGACACCAACATCAGCTTCCTGCTAGAGCGCAGTAG 1035 0.4242 MKKNTRKLREMAWCNESQDEEGVRIQSNNPTTSETRIITCPSCGHTLEFQDQGDILNELPGLPSGVKFDPNEQEILQHLEAKVECDVRKLHPLIDQFIPTIEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHCSDNEGGGEGETRWHKTGKTRPVFINVQLKGFKKILVLYTNYGRKRKPEKTSWVMHQYHLGTNEEEKEGQLVLSKVFYQTQPRQCGSSSIIIKDLYDNDKKTANNDQRGRSNDRDTCSTMIPTKHNNGSGGILEYYSSPYMSYEHVVVGHHNNNVRESSPQLIPNLVVQGDVSSFFSFSNGLKQTKTGHQHQLPARAQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1668 344 FunFam NAC domain-containing protein 73 71 229 - -
Lele15g1668 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 27 253 IPR044799 GO:0003700
Lele15g1668 344 MobiDBLite consensus disorder prediction 246 269 - -
Lele15g1668 344 ProSiteProfiles NAC domain profile. 62 225 IPR003441 GO:0003677|GO:0006355
Lele15g1668 344 MobiDBLite consensus disorder prediction 138 161 - -
Lele15g1668 344 SUPERFAMILY NAC domain 56 225 IPR036093 GO:0003677|GO:0006355
Lele15g1668 344 MobiDBLite consensus disorder prediction 142 161 - -
Lele15g1668 344 Gene3D NAC domain 71 229 IPR036093 GO:0003677|GO:0006355
Lele15g1668 344 Pfam No apical meristem (NAM) protein 63 206 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1668 Lele-ChrLele15 9931420 9934931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1668 11 234 NAC Transcription Factor Family AT4G28500 66.379 5.14e-112 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele15g1668 NAM 3.4e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1668 15 9931420 9934931 Lele15g1668 15 9931420 9934931 ECH
Lele15g1668 15 9931420 9934931 Lele16g1704 16 9894613 9897342 ECH
Lele13g0811 13 19859492 19862221 Lele15g1668 15 9931420 9934931 hybridization
Lele14g0702 14 18244542 18247209 Lele15g1668 15 9931420 9934931 hybridization