Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1655 ATGAGCACTACCAGATTTATCAAGTGTGTTACAGTTGGAGATGGAGCTGTGGGGAAAACTTGCATGCTTATCTCCTACACCAGTAATACCTTCCCAACGGATTATGTTCCAACAGTGTTTGATAACTTCAGTGCTAATGTAATGGTGGATGGTAGTTCTGTGAATCTTGGCTTATGGGACACCGCAGGGCAAGAAGATTACAACAGGTTAAGGCCTTTGAGTTACAGAGGAGCTGATCTGTTTTTGTTGTGTTTTTCTCTCATAAGCAAAGCCAGTTATGAGAACATTTCCAAGAAGTGGATACCTGAGCTGAAACATTACGCTCCAAATATGCCTGTTGTGCTAGTTGGAACAAAGCTGGATTTGCGAGGTGACAAGCAATATCTAAAGGATCATCCAGAAGCAACTCCAATAACTACTGCCCAGGGTGAAGAACTAAAGAAACTGATAGGGGCAGTAACATATATAGAGTGCAGCTCCAAAACGCAACAGAATGTGAAGACAGTTTTTGATGCTGCAATCAAGGTCGCTTTGAGGCCATTAAATTCAAAGAGGAAACCACCCAAGAGAAGGACTTGTGCTTTCTTTGAGGCGGTGGTCCAGGAAGAGAGAGAAGCTGGGAAGCAGCAGCAAGCAAGATATGTAAATGAGAGAGTTATAGTGATTAATGTTGATGTCATTTTTGGTGGAGACAAAACGGTAGGAACAGAAGAAAGAAAAGATGATCCGAAAAGAAAAGGATTAAAACAAAGGAGATATGGCCAAAGGGCCAAAAGTAGAAGCCAAAGAACTTCTTCTTCTCAGGAAGGAGTTGAGGAGGAGAGAAGTGCAGAGCCAAAGCCAAGATGGAACCCAAAACCAGAGCAGATTCGGATTCTGGAAGCCATATTCAACTCAGGGATGGTGAACCCTCCAAGAGACGAGATCAGGAAGATCAGAGCCCAACTTCAAGAGTACGGCCAAGTCGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCAAATCCAGATCCAAGCACAAGCTTCGTCACCTCCACAATTCTTCTAATAACGCCCATCAAGCCCAAAACTCAAACGATTCCTCTCCCAAAGAAATCATAATACCACCTAATAAGCCATTAATGTCTAATAATATTGTCTTCTCCGACGTCTCTTCTGATATTGCAGTTCCCATGCCTTCTACTACGCCGCCACCGCCGCCTCAGCCTTTCTTCTTTATTCCTGTGCATCAGCAGAATGGAGGAGCAGGAGGAGTGGCTAATAATGTTGTTCCTGTTTCTGTTCCTATTGCACAAGGTTTTTGCTTCTCTGATCTATCAAGTGTGGTTCAACCTGAAGCTCCTCGTGATCATCACCATCATCAACAACAAATCAATGTTGGGTCTTGCACTAGTCTTTTGCTTAACGAAATCATGACCCGTTCGTCCTCCGAGAATGACCAAGACAAGGTTATACAAATCCAACAACACCCTCCTTTAATCACTCACACTACTGTCCCTCCCGCCAGCACCACCCCTGTTACTGTTCCATCCCCCATCTCTGAGATTCAAGGCTTCGGTGAGGCGGGGACTGCAGAGGGCCCACCTGGTGGTTCGATGATGAAATCGACATTGTTCATTAACGACGTCGCATTTGAAGTGGGTGCGGGACACCTCAACGTGCGGGAGGCCTTCGGCGATGACGCGGTACTCATCCACGGCTCCGGTCAGCCTGTGCTCATCGACGAATGGGGCGTCACGCTTCAGCCTCTCCAGCACGATGCATTTTATTACCTGGTGCGCGCGTTATCGTGA 1794 0.4615 MSTTRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVMVDGSSVNLGLWDTAGQEDYNRLRPLSYRGADLFLLCFSLISKASYENISKKWIPELKHYAPNMPVVLVGTKLDLRGDKQYLKDHPEATPITTAQGEELKKLIGAVTYIECSSKTQQNVKTVFDAAIKVALRPLNSKRKPPKRRTCAFFEAVVQEEREAGKQQQARYVNERVIVINVDVIFGGDKTVGTEERKDDPKRKGLKQRRYGQRAKSRSQRTSSSQEGVEEERSAEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLHNSSNNAHQAQNSNDSSPKEIIIPPNKPLMSNNIVFSDVSSDIAVPMPSTTPPPPPQPFFFIPVHQQNGGAGGVANNVVPVSVPIAQGFCFSDLSSVVQPEAPRDHHHHQQQINVGSCTSLLLNEIMTRSSSENDQDKVIQIQQHPPLITHTTVPPASTTPVTVPSPISEIQGFGEAGTAEGPPGGSMMKSTLFINDVAFEVGAGHLNVREAFGDDAVLIHGSGQPVLIDEWGVTLQPLQHDAFYYLVRALS 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1655 597 CDD Rop_like 6 178 - -
Lele15g1655 597 MobiDBLite consensus disorder prediction 267 287 - -
Lele15g1655 597 Gene3D - 5 194 IPR027417 -
Lele15g1655 597 CDD homeodomain 279 341 IPR001356 GO:0003677
Lele15g1655 597 MobiDBLite consensus disorder prediction 494 512 - -
Lele15g1655 597 SMART rab_sub_5 7 180 - -
Lele15g1655 597 MobiDBLite consensus disorder prediction 348 365 - -
Lele15g1655 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 177 IPR027417 -
Lele15g1655 597 MobiDBLite consensus disorder prediction 233 287 - -
Lele15g1655 597 ProSiteProfiles small GTPase Ras family profile. 2 221 IPR001806 GO:0003924|GO:0005525
Lele15g1655 597 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Lele15g1655 597 PANTHER WUSCHEL-RELATED HOMEOBOX 9 260 594 IPR044557 GO:0003700|GO:0050793
Lele15g1655 597 ProSiteProfiles 'Homeobox' domain profile. 276 341 IPR001356 GO:0003677
Lele15g1655 597 FunFam rac-like GTP-binding protein RHO1 5 192 - -
Lele15g1655 597 PRINTS Transforming protein P21 ras signature 47 69 - -
Lele15g1655 597 PRINTS Transforming protein P21 ras signature 30 46 - -
Lele15g1655 597 PRINTS Transforming protein P21 ras signature 155 177 - -
Lele15g1655 597 PRINTS Transforming protein P21 ras signature 7 28 - -
Lele15g1655 597 PRINTS Transforming protein P21 ras signature 109 122 - -
Lele15g1655 597 MobiDBLite consensus disorder prediction 340 365 - -
Lele15g1655 597 ProSiteProfiles small GTPase Rab1 family profile. 2 223 - -
Lele15g1655 597 MobiDBLite consensus disorder prediction 494 515 - -
Lele15g1655 597 Pfam Homeodomain 280 340 IPR001356 GO:0003677
Lele15g1655 597 FunFam WUSCHEL-related homeobox 11 280 347 - -
Lele15g1655 597 SUPERFAMILY Homeodomain-like 278 344 IPR009057 -
Lele15g1655 597 MobiDBLite consensus disorder prediction 233 248 - -
Lele15g1655 597 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Lele15g1655 597 Gene3D - 280 345 - -
Lele15g1655 597 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Lele15g1655 597 Pfam Ras family 8 177 IPR001806 GO:0003924|GO:0005525
Lele15g1655 597 SMART ras_sub_4 4 180 - -
Lele15g1655 597 SMART HOX_1 278 345 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1655 Lele-ChrLele15 9844264 9850306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1655 259 593 Wox Gene Family AT2G33880 38.320 4.83e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele15g1655 Ras 3.7e-51 CL0023