Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1654 ATGGTTCTGGCCTCCCAGACAGATCTTCCTTTCAACGAAAACGACTCACAAGACATGTTCATATACCAAGTCCTTCACGAGGCCAACGCTCTTCACACCGCCGCCGCCACGTCCTCCTCCTCCTTGACTGCCGAAAACGCCGCTGCATTCATCCCGCAGAGGCAACAAGCCACCGCACAGAACGGGCTAGAGCCGACCAGGACCGTCGGAAAGAAGCATTACAGAGGTGTAAGGCGACGGCCGTGGGGGAAGTACGCGGCGGAGATCCGAGACTCCGCCCGGCACGGAGCACGATTGTGGCTGGGCACGTTCGAAACCGCCGAGGAGGCCGCCATGGCTTACGATCGAGCAGCTTTTAGAATGAGAGGCGCTAAAGCCTTGCTCAATTTTCCCGCCGAAATCGTAGCTTCTTCCATGGACATGTCTCATGATTCTCACAAACCTAATCCGAGCTCCTCAGGAAGATCATTGTGTAATCAAGATTCAGATTCAAGTACTAGCAGCAGCAGTTCCTGCGTTAATTCCATTGCGACCAATAGAGCCTTGTTAGAAAGCACAGACAGTTAG 567 0.5397 MVLASQTDLPFNENDSQDMFIYQVLHEANALHTAAATSSSSLTAENAAAFIPQRQQATAQNGLEPTRTVGKKHYRGVRRRPWGKYAAEIRDSARHGARLWLGTFETAEEAAMAYDRAAFRMRGAKALLNFPAEIVASSMDMSHDSHKPNPSSSGRSLCNQDSDSSTSSSSSCVNSIATNRALLESTDS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1654 188 MobiDBLite consensus disorder prediction 140 173 - -
Lele15g1654 188 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Lele15g1654 188 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Lele15g1654 188 FunFam Ethylene-responsive transcription factor 2 72 133 - -
Lele15g1654 188 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Lele15g1654 188 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Lele15g1654 188 PANTHER DNA-BINDING DOMAIN 26 169 IPR044808 GO:0003700|GO:0009873
Lele15g1654 188 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Lele15g1654 188 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Lele15g1654 188 SUPERFAMILY DNA-binding domain 73 133 IPR016177 GO:0003677
Lele15g1654 188 MobiDBLite consensus disorder prediction 142 173 - -
Lele15g1654 188 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1654 Lele-ChrLele15 9838698 9839264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1654 5 150 AP2-EREBP Transcription Factor Family AT4G17500 46.541 8.14e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele15g1654 AP2 5.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1654 15 9838698 9839264 Lele15g1654 15 9838698 9839264 ECH
Lele13g0825 13 19938958 19941601 Lele15g1654 15 9838698 9839264 hybridization
Lele14g0716 14 18346405 18347154 Lele15g1654 15 9838698 9839264 hybridization