Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1636 ATGGATTTCTCCAAGAAGCGCAAAACCGAGGAGAACGGAACCAACGACTCCGTGCCCTCAACAGCACCCCTTGGCGCAGATGACATCCGCAGGATCCTACAACCCTTTACGCAAGAACAGCTCATCGACCTGCTTCAAGCAGCTGCTTTTCATCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCCGACCGTGACTCCACCCTTCGGAAACTCTTTGTTCGGGGGCTTGCTGGGGAAACCACCACAGAGACACTCAGCAGTGTATTCTCCTCCTTTGGACCGCTCGATGAGGCGATCGTTATCTTCGACAAAACGACAGGGAAGTCCAAAGGATACGGCTTCGTGACGTTTAAGCACGTTGATGGTGCTATATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACCCAGCTTGCCGCTGCTGGATTATCGGCCAGTCAAGGGACTAATGCGGCTGCTGCAGCCACAAGTGATGTTTCTACCCGAAAAATTTTCGTGGGCAATGTGCCGTTTGATATCTCGTCGGAGAGGTTGTTGAATTACTTTTTGGCATATGGGGAAATCGAAGAAGGGCCTCTTGGGTTTGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCTAGGGCTTCTCTTGCTGAGCCAGTCAAAACTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAGAAGGGAAAATCAGGAGGAGCTCCCATCCAGGGCCCTCCTGGGTTACCAGGTAATGGCATGGCAGCACAACAACCGCAACCAGCTTTACCTGGCCCCATGATGGGATCAAATTACGGTGGTCATGGTTCTTCATATGGGGGATTTGGTGGTGCGCATCAGGGCCCCATGCAGGTGCCTGGTAATAATTATGGGTTGCAGTCTTCATTGCCGCCATATGGCACTCAGGTTCCATCTAACTTAGCTCCTAATAGCGGTGGGGGGTACGGTCCTGGAATAGGAGGGGCTTATAGTGGTTCTCAGTTCAGTGGGCCAACTTCCGGTGATTATGGCGCTAGGCTGCCTCCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGATGGTTCGCATTACAATTTGCCCTCATCTGCTGTTCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGGCTGGCTCCCGGAGGGATGTACCAAGGCATGCCGCCCTACTACTGA 1236 0.5178 MDFSKKRKTEENGTNDSVPSTAPLGADDIRRILQPFTQEQLIDLLQAAAFHHPDVLESIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSFGPLDEAIVIFDKTTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAAAGLSASQGTNAAAAATSDVSTRKIFVGNVPFDISSERLLNYFLAYGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLAEPVKTIDGHQVLCKLAMDNKKGKSGGAPIQGPPGLPGNGMAAQQPQPALPGPMMGSNYGGHGSSYGGFGGAHQGPMQVPGNNYGLQSSLPPYGTQVPSNLAPNSGGGYGPGIGGAYSGSQFSGPTSGDYGARLPPTSAGMPSGGYPDGSHYNLPSSAVPSQHQQPMQMPRLAPGGMYQGMPPYY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1636 411 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
Lele15g1636 411 MobiDBLite consensus disorder prediction 248 271 - -
Lele15g1636 411 PANTHER GEO13361P1-RELATED 53 310 - -
Lele15g1636 411 Gene3D - 150 301 IPR012677 -
Lele15g1636 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Lele15g1636 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 237 IPR000504 GO:0003723
Lele15g1636 411 SUPERFAMILY RNA-binding domain, RBD 161 264 IPR035979 GO:0003676
Lele15g1636 411 MobiDBLite consensus disorder prediction 292 314 - -
Lele15g1636 411 MobiDBLite consensus disorder prediction 346 401 - -
Lele15g1636 411 MobiDBLite consensus disorder prediction 1 24 - -
Lele15g1636 411 Gene3D - 61 149 IPR012677 -
Lele15g1636 411 SMART rrm1_1 169 241 IPR000504 GO:0003723
Lele15g1636 411 SMART rrm1_1 71 143 IPR000504 GO:0003723
Lele15g1636 411 CDD RRM_RBM24_RBM38_like 70 145 - -
Lele15g1636 411 MobiDBLite consensus disorder prediction 380 394 - -
Lele15g1636 411 CDD RRM_RBM24_RBM38_like 168 243 - -
Lele15g1636 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Lele15g1636 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 248 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1636 Lele-ChrLele15 9712461 9713696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1636 160 376 C2H2 Transcription Factor Family AT2G19380 30.870 2.11e-17 82.4