Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1623 ATGCCCGTCCGCGAAGATTGTTGGAGCGAGGAAGCTTCCTCCACCCTCGTCGACGCTTGGGGCCGCCGTTATATACAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGAAGGACGTGGCCGACGCTGTCAACGCTCTACATGGTCATACCAAGAAGACGCATCGTACGGAGGTTCAGTGCAAGAACCGCATCGATACCATTAAGAAGAAGTATAAGGTTGAGAAGAATAGGGTTTCCTCCCCAAACGGGGCTCCTTCCACTTGGCCCTTCTTCGATCGCTTAGACGTTTTGATTGGGCCTTCTCTGAGTGCGAAAACGGCGTCGGCGTCGCCTCCGGTGGTACTTTCTTTGCCGTATCACAAAACCCCGTCCCCCCCATCTGCGGGGTGGGCGCTACCGCAGAAGCGGTCGGCAGTGGCACTATTAGGGGATGGTTTCTTCATGAAGAATTATTCAGCTATGGCAGCCGCGGCAGCTGCAGCAGAGGCTGATGAGGACGAAGACGATGGAGATGAAGGGAGGGGAAGTGAGGTTGAGGAAGAAGAGAGGGAGAAGGAAGGGATGAGGAGCTTGGCAAAAGCGATAGAGAGGTTCGGGGAAGTTTATGAGAGAATGGAGAGAGAAAAATTGAGGCAAATGATGGATTTGGAGAAACAGAGGATGCAGTTTACTAAAGATCTGGAAGTACAGAGGAGGCATATGTTCATGGACACGCAGGTTCAGTTGGGGAGGATCAAACGCGGGAAACGATCTGGTTCTAATGTTTGTTTTCTGAGGCACCTCTTCATCTCCTGTTTTGGGGGTAATTCCTTGCGAGTGAATGTTGTCATCGGCAAGGTTGAGGCTGCAGGCTCCAAAACCTCACAACTCTGGTGCAACAGGGCAGGATCTGACAGACATAATTATAACTGTTCCCTGAATATAACTCTTGCATGGGGAGTATCCTTATTTGACTATTCTGCTCTGGACAAGTATGCTTACATGAGGCATCATAGATTTTTGGTTGCAATTGCATGTTTATCCTATTATCCAGCTACTCAAGGTGGTGCTCTTTCTAAAATATGTATAGCTAGCCAAGTGCGCAAAGATTCGACAGTGGTTTCTGATTGGAAGGCGTTTTGGGGTGATAAGCCTCTGTTTAAAAGTTCTCTCACTCGACTCAATCTCCATTCGTTTTCAACTTCACAAAAGCAAGATTGCTACGAGTTTGCTGTTTTCTACGGCATGGAGAAAGCTATTAATTTGCCTTGA 1254 0.4896 MPVREDCWSEEASSTLVDAWGRRYIQLNRGNLRQKDWKDVADAVNALHGHTKKTHRTEVQCKNRIDTIKKKYKVEKNRVSSPNGAPSTWPFFDRLDVLIGPSLSAKTASASPPVVLSLPYHKTPSPPSAGWALPQKRSAVALLGDGFFMKNYSAMAAAAAAAEADEDEDDGDEGRGSEVEEEEREKEGMRSLAKAIERFGEVYERMEREKLRQMMDLEKQRMQFTKDLEVQRRHMFMDTQVQLGRIKRGKRSGSNVCFLRHLFISCFGGNSLRVNVVIGKVEAAGSKTSQLWCNRAGSDRHNYNCSLNITLAWGVSLFDYSALDKYAYMRHHRFLVAIACLSYYPATQGGALSKICIASQVRKDSTVVSDWKAFWGDKPLFKSSLTRLNLHSFSTSQKQDCYEFAVFYGMEKAINLP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1623 417 Coils Coil 189 209 - -
Lele15g1623 417 MobiDBLite consensus disorder prediction 162 178 - -
Lele15g1623 417 FunFam trihelix transcription factor ASIL2 8 74 - -
Lele15g1623 417 Gene3D - 8 74 - -
Lele15g1623 417 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 3 250 IPR044823 -
Lele15g1623 417 MobiDBLite consensus disorder prediction 161 190 - -
Lele15g1623 417 Pfam Myb/SANT-like DNA-binding domain 5 97 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1623 Lele-ChrLele15 9637014 9640411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1623 4 254 Trihelix Transcription Factor Family AT3G14180 31.487 5.21e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele15g1623 Myb_DNA-bind_4 1.2e-23 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1623 15 9637014 9640411 Lele15g1623 15 9637014 9640411 ECH
Lele15g1623 15 9637014 9640411 Lele16g1653 16 9594204 9595067 ECH
Lele13g0855 13 20158200 20159476 Lele15g1623 15 9637014 9640411 hybridization
Lele14g0752 14 18545793 18546662 Lele15g1623 15 9637014 9640411 hybridization