Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1616 ATGTCATCATCAGAAGGATTATTCCAGATCGAAGACGACAAGAAGAACAGCAGGTGTACTGAGGAAACTTCATTGGGATCTTCTCAGACATGCTTGTCCTTTGATTTGAATGAAGGAGCAAGCATAGAAGACAACAATGGAACAGACTGTCATATCATGGCTGAGGAGAATGATGATGATGAAGATGAGAAAGCAAAGGATAACAGAAGCACGACGTCGAGGGAAGAGAAGAATGAAAGAAGACAGTATGTTAGATCAAAGATGCCTCGCCTTCGATGGACTCCTGAACTTCATCTCTCCTTTGTTCAAGCTGTCGAAAGGCTTGGCGGTCAAGACAGAGCCACGCCCAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGGCTTAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGATGAGGCCGGGCAAGGTGGAACATACAGATCCACCCAAAGGGAAGGTCTTATTTCTCATCAATATTTGAAGATGGGAAACGGCGGAATCATGCTTGCGAGTAATTGCAACGTCCAAACCGGTCTCTTTCTGCCCTCCTTCGCCCTATCCCCTCCACACACAAAGCCTACTCATTCATGGAAGCAATTGCAGTGGCATTTGGATCGTCATCAACCTACAAACGGCCAAATAACACCCACGAAACGCAGCAGCCAATTTCTGGAAGAAAACAGGTGGCCCCCATTCGACATGATGAACGCTCATCAATGGAAGTTCAAAAGGTTACCCACCAATGCCACCTCAAGACCAGATCCACATCATCCCAACTTCTTCAAGCTGGATTTTGAGCCCCCGTTTCGGATCGAGCTGAATGAAGCGATGCTGAGGGAAGAGAAGCAATGGCTGCCTGATCTGCAATTGGGGCTGAGTCTGGGAGGTGGCAAAGACACCCAAGATATTCGTACTGAGCTTTCCCTTTCTTAG 957 0.4702 MSSSEGLFQIEDDKKNSRCTEETSLGSSQTCLSFDLNEGASIEDNNGTDCHIMAEENDDDEDEKAKDNRSTTSREEKNERRQYVRSKMPRLRWTPELHLSFVQAVERLGGQDRATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGGTYRSTQREGLISHQYLKMGNGGIMLASNCNVQTGLFLPSFALSPPHTKPTHSWKQLQWHLDRHQPTNGQITPTKRSSQFLEENRWPPFDMMNAHQWKFKRLPTNATSRPDPHHPNFFKLDFEPPFRIELNEAMLREEKQWLPDLQLGLSLGGGKDTQDIRTELSLS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1616 318 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Lele15g1616 318 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 144 IPR006447 GO:0003677
Lele15g1616 318 Pfam Myb-like DNA-binding domain 91 141 IPR001005 -
Lele15g1616 318 MobiDBLite consensus disorder prediction 40 84 - -
Lele15g1616 318 MobiDBLite consensus disorder prediction 63 84 - -
Lele15g1616 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 145 IPR017930 -
Lele15g1616 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 66 198 - -
Lele15g1616 318 MobiDBLite consensus disorder prediction 1 27 - -
Lele15g1616 318 FunFam Myb family transcription factor 87 145 - -
Lele15g1616 318 Gene3D - 88 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1616 Lele-ChrLele15 9604067 9606255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1616 78 163 G2-like Transcription Factor Family AT2G42660 69.318 2.13e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele15g1616 Myb_DNA-binding 5.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1616 15 9604067 9606255 Lele15g1616 15 9604067 9606255 ECH
Lele15g1616 15 9604067 9606255 Lele16g1646 16 9554918 9561289 ECH
Lele13g0861 13 20195647 20197840 Lele15g1616 15 9604067 9606255 hybridization
Lele14g0759 14 18582119 18585908 Lele15g1616 15 9604067 9606255 hybridization