LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g1604	ATGACGTCGGATCTCCTTCCTCCTCCCAAGCTTGTCGCCGGAAGCAACATCCTCTTATGGGGTTCCTTCGATCCAAAAATTCAAACCTCTTCCTCCAGACTAAACGAACAAATAGAAGAAGGCAAGAAGAGATTTCGACAACGGTCGAGGACAGCGAGGCAATGGAGAGCTGGAATCACATGGGCTTGTCTTCTCTTGCTGGGACCTCCATTTCCTGGTCTTCTTTCACACCATGATCTCCTCCTTCTCCTTCTTCCTTCCTTAGATTCCTCTTTCACTCTTCCCTCATCCATGGCCGATGATAAGGAGATGTCTGCCTCTGTCAATGGGAATGAGTCACTCACCGGACACATCATATCTACAACAATAGGAGGCAAAAATGGGGAGTCCAAACAGACTATTAGTTACATGGCAGAACGTGTTGTGGGAACTGGATCATTTGGGATTGTTTTCCAGGCAAAATGCTTAGAAACTGGTGAGGCAGTGGCCATTAAGAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGAGGGATGGACCATCCAAATGTGATCTCCTTGAAGCATTGTTTCTTTTCCACTACAAGTACAAATGAGCTATATCTGAATCTGGTGATGGAATATGTTCCCCAGAGCCTGTATCAGGTCATAATGCATTATAGCAATGCTAATCAGAGAATGCCACTTATTTATGTAAAACTTTATCTGTACCAGATTTTCAGGGGTTTGGCTTATATCCACACTGTTCCAGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATACTCATACACATCAGGTTAAGCTATGTGATTTTGGAAGCGCAAAAATGCTGGTCAGAGGGGAAACTAATATATCATACATATGTTCACGCTTCTATCGAGCCCCAGAACTTATATTTGGTGCGACAGAGTATACTACCTCAATTGACATTTGGTCAGCTGGCTGTGTCCTAGCTGAACTTCTCTTAGGCCAGCCATTGTTTCCTGGCGGAAGTGCAGTAGACCAGCTTGTGGAGATTATAAAGGTTCTTGGAACACCCACTCGGGAGGAAGTCCGTTGTATGAATCCCAGTTACAATGATTTTAGGTTCCCCCAGCAAAAAGCACGCCCATGGCATAAGATATTCCACAAAAGGATGCCTCCAGAAGCAATTGATCTTGTTTCCCGGCTTCTGCAGTACTCCCCAAGCCTTCGTTGCACTGCGCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGAGAACCCAATGCTCGCCTGCCAAATGGGCGTCCATTTCCAGTATTATTCAACTTTGGACAGGAATTATCTGGAGCATCTCCAGAACTTGTTAATAAGTTGATACCAGACCATGTGAAGCGGCAAATAGGGCTACAATTCGAGCATCTGACAGGAACTTGA	1431	0.4458	MTSDLLPPPKLVAGSNILLWGSFDPKIQTSSSRLNEQIEEGKKRFRQRSRTARQWRAGITWACLLLLGPPFPGLLSHHDLLLLLLPSLDSSFTLPSSMADDKEMSASVNGNESLTGHIISTTIGGKNGESKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRGMDHPNVISLKHCFFSTTSTNELYLNLVMEYVPQSLYQVIMHYSNANQRMPLIYVKLYLYQIFRGLAYIHTVPGVCHRDLKPQNILVDTHTHQVKLCDFGSAKMLVRGETNISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGGSAVDQLVEIIKVLGTPTREEVRCMNPSYNDFRFPQQKARPWHKIFHKRMPPEAIDLVSRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPVLFNFGQELSGASPELVNKLIPDHVKRQIGLQFEHLTGT	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g1604	476	FunFam	Shaggy-related protein kinase kappa	216	463	-	-
	Lele15g1604	476	Pfam	Protein kinase domain	136	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1604	476	ProSiteProfiles	Protein kinase domain profile.	136	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1604	476	FunFam	Glycogen synthase kinase-3 beta	120	215	-	-
	Lele15g1604	476	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	257	269	IPR008271	GO:0004672\|GO:0006468
	Lele15g1604	476	CDD	STKc_GSK3	131	423	IPR039192	-
	Lele15g1604	476	SMART	serkin_6	136	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1604	476	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	103	465	-	-
	Lele15g1604	476	Gene3D	Phosphorylase Kinase; domain 1	121	215	-	-
	Lele15g1604	476	SUPERFAMILY	Protein kinase-like (PK-like)	135	444	IPR011009	-
	Lele15g1604	476	Gene3D	Transferase(Phosphotransferase) domain 1	216	463	-	-
	Lele15g1604	476	ProSitePatterns	Protein kinases ATP-binding region signature.	142	166	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g1604	Lele-ChrLele15	9508601	9513552	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g1604	142	458	MAP Kinase Gene Family	AT2G43790	34.118	8.64e-57	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lele15g1604		Pkinase	6.2e-65	CL0016