Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1602 ATGGATCAGGCAAGAAAGCTAGAAAGTGATGAGGTATCGGATCTCGTTGATGAAGGGACAGGAAAGAAAACGAGTCATTCGGTTGAAGGGTCTGCCGATTCAGTAGCTGGGGGCAGCTTGAGTGGAACTATCATAAGTGGAGATGTGACTTCTGAAGAGATGAGTAATGATGCGGGATTGACTAAGAAACTACATGAGGCGCCTGCAGAAGCTATGGATCAGGGCATGCGTGATCAGCAAAATACCAGTGACACATTCCACGTAGTTGATCAAGGAACAAGTTATAATTCAAGGAATTTGCATAATAGTGCTGTACTTGAGACCGTGGTTGTAATAGATTCTGTTGGGACAGAGGGTGTGAATGGAGATAATAGGAAGTTGGAAGCGAAGGTCAATGAATCGGGGTTGGACAAGGCCTCCATGAAATCACCTAAAAGGCCTTCTGAAGCGGATAAAAATTCATGCGTGATCAATATAAAGTCTGGTAGCTGCAGAGAGTTTAGCGAGAATGTGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTTCTGGGCAACCATCAGATTCAGCAGCTGCTAGCCCTACAAACATTGCTTCTACTGTAGATTTAATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTGGGTATTGCGCACAGTCATTGTGCTGAGGCATGGTTCAAGCTAAAAGGAAACAGATTGTGTGAAATATGTGGGGAAACTGCCAAAAATGTTTCGGGTGTTGCCGATCATGGATTTATGGAAGAGTGGAATGAAAGAACATTCATTGACAACCGTAGCACCTCATCTGGCATGTGTTGTGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA 918 0.4434 MDQARKLESDEVSDLVDEGTGKKTSHSVEGSADSVAGGSLSGTIISGDVTSEEMSNDAGLTKKLHEAPAEAMDQGMRDQQNTSDTFHVVDQGTSYNSRNLHNSAVLETVVVIDSVGTEGVNGDNRKLEAKVNESGLDKASMKSPKRPSEADKNSCVINIKSGSCREFSENVEGERICRICHLASGQPSDSAAASPTNIASTVDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVADHGFMEEWNERTFIDNRSTSSGMCCGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1602 305 MobiDBLite consensus disorder prediction 1 24 - -
Lele15g1602 305 MobiDBLite consensus disorder prediction 25 54 - -
Lele15g1602 305 Pfam RING-variant domain 177 238 IPR011016 GO:0008270
Lele15g1602 305 PANTHER ZINC FINGER, RING-CH-TYPE 63 305 - -
Lele15g1602 305 MobiDBLite consensus disorder prediction 131 151 - -
Lele15g1602 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 249 IPR013083 -
Lele15g1602 305 SUPERFAMILY RING/U-box 173 241 - -
Lele15g1602 305 MobiDBLite consensus disorder prediction 1 54 - -
Lele15g1602 305 SMART ringv_2 176 239 IPR011016 GO:0008270
Lele15g1602 305 ProSiteProfiles Zinc finger RING-CH-type profile. 169 245 IPR011016 GO:0008270
Lele15g1602 305 MobiDBLite consensus disorder prediction 131 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1602 Lele-ChrLele15 9495085 9498422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1602 106 304 C3H Transcription Factor Family AT5G05830 36.715 1.51e-31 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1602 15 9495085 9498422 Lele15g1602 15 9495085 9498422 ECH
Lele13g0875 13 20291244 20294578 Lele15g1602 15 9495085 9498422 hybridization
Lele14g0773 14 18677905 18681145 Lele15g1602 15 9495085 9498422 hybridization