Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1575 ATGGAAGGATATGGGGTGGTTACTGTGTACGGGAATGGTGCTATTGCAGAGACCAAGAAGACTCCTTTCTCTGTCAAGGTGGGTCTTGCTCAGATGCTCCGTGGCGGCGTTATCATGGACGTTGTGAACGCCGAGCAGGCCCGCATCGCCGAGGAGGCCGGTGCTTGCGCCGTCATGGCCCTGGAGCGTGTTCCCGCCGATATCCGTGCTCAAGGCGGCGTTGCTCGCATGAGCGACCCGCAACTCATAAAGGAAATCAAGCAGGCTGTGACGATTCCTGTGATGGCGAAGGCCCGTATAGGACACTTTGTGGAAGCTCAAATCCTCGAAGCCATTGGCATAGATTACGTGGACGAGAGCGAGGTCCTCACCCTCGCCGACGACGAGAACCACATCAACAAGCACAACTTCCGCATTCCTTTCGTCTGTGGGTGTCGGAATCTCGGGGAAGCTCTCCGGAGAATTCGCGAAGGTGCGGCGATGATTCGAACCAAAGGGGAAGCAGGGACCGGGAATATCATTGAGGCGGTGAGGCACGTGAGATCGGTGATGGGTGACATCAGGGCTTTACGGACCATGGATGATGATGAAGTCTTCACATTCTCAAAGAAGATTGGAGCTCCCTATGATTTGGTGATGCAGACGAAACAATTGGGTCGGCTTCCAGTGGTTCACTTCGCGGCAGGTGGAGTTGCAACTCCGGCCGACGCAGCCTTGATGATGCAATTAGGGTGTGATGGGGTTTTCGTCGGGTCTGGTGTGTTCAAGAGTGGCGACCCCGCAAAACGAGCCAGGGCTATTGTGCAAGCTGTGACCCATTACAGTGATCCAGAGATTTTGGCTGAAGTTAGCTGCGGCTTAGGCGAAGCCATGGTTGGGATCAATTTGACAGACAAAAAGGTCGAGAGGTTTGCGGCAAGCTTTTTCTCTACCTCTGATCTGGAGATGGAAGAGCCACATGCTAAGGAAGCCTTTTCATCTTCCGGTTGGTTAATTCTGTTAGTCTCCTGGCCGTTAGCTGGTTGGGTTATAAAAGAGAAGATGTGGGGTTTGCATTGGGTAAATGGCCAGACTGATGATTTAGCTGTAATTTCCAGACCTTGCTCAAATGGTGGAAAGAATGGCGCGGGATCATTTGGTGGAAAGGCTGTTTCAGAGGAAAGCTCCAAAAGACAAAAGGGTCAGTTACCTGATAGTACTGTTATAGCTGCCAAGCAACTGTCATCCATGTCGCGGCAGGGAAATCGTGAATTTCTAAATGAATTAGGCCTAATATCTTGTTTGCAACATCCCAACCTTGTGAAAATCCATGGATCTTGCATTGAAGGGGATCAACTACTATTGGCAATGAAAACAATCGGATTCAACTGGATTGGCCCACAAGAGTCAGGATCTGCATTGGCATTGCAAAAGGCATGTCAGTTGCAACAAGGTGGAAAGTTACTGGAGCTGGTAGATGAAAGAATGGGGTCAAACGTTAATGAAAGGGAAGCAGAAACGGTGCTTAAAGTGGCTCTTCTGTGCACAAATGCATCACCATCACTTAGGCCGACAATGTCTGAGGTTGTAAATATGCTTGAAGGACAAATGGATATTCCAGATGTAGTTCCAGATCCAGGTGCTTACTATGAAGATTTAAGGTTTAAAGCCTTGAGAGATCTTGATCAATGGTCAAAGCAGAGTTTTAATGGAAACCAGGCTCAATCTTCAGTTTCAATCCGTACCTTCAGCTTAGAATCTGGAAATACAATAATAGATTCATCTATGGATCCTCAGTTAGTCCAGAAAAGTGAGATTTCAACTTCCAAGGCAAGTTCAACACCCTGA 1827 0.4866 MEGYGVVTVYGNGAIAETKKTPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTLADDENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRALRTMDDDEVFTFSKKIGAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLTDKKVERFAASFFSTSDLEMEEPHAKEAFSSSGWLILLVSWPLAGWVIKEKMWGLHWVNGQTDDLAVISRPCSNGGKNGAGSFGGKAVSEESSKRQKGQLPDSTVIAAKQLSSMSRQGNREFLNELGLISCLQHPNLVKIHGSCIEGDQLLLAMKTIGFNWIGPQESGSALALQKACQLQQGGKLLELVDERMGSNVNEREAETVLKVALLCTNASPSLRPTMSEVVNMLEGQMDIPDVVPDPGAYYEDLRFKALRDLDQWSKQSFNGNQAQSSVSIRTFSLESGNTIIDSSMDPQLVQKSEISTSKASSTP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1575 608 SUPERFAMILY Ribulose-phoshate binding barrel 34 282 IPR011060 -
Lele15g1575 608 SUPERFAMILY Protein kinase-like (PK-like) 396 452 IPR011009 -
Lele15g1575 608 MobiDBLite consensus disorder prediction 587 608 - -
Lele15g1575 608 Pfam SOR/SNZ family 23 228 IPR033755 -
Lele15g1575 608 ProSitePatterns PdxS/SNZ family signature. 221 239 IPR001852 GO:0042819|GO:0042823
Lele15g1575 608 MobiDBLite consensus disorder prediction 374 397 - -
Lele15g1575 608 ProSiteProfiles PdxS/SNZ family profile. 25 309 IPR001852 GO:0042819|GO:0042823
Lele15g1575 608 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED 14 306 IPR001852 GO:0042819|GO:0042823
Lele15g1575 608 Gene3D Transferase(Phosphotransferase) domain 1 449 538 - -
Lele15g1575 608 FunFam Pyridoxine biosynthesis protein PDX1 17 307 - -
Lele15g1575 608 Hamap Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 20 330 IPR001852 GO:0042819|GO:0042823
Lele15g1575 608 ProSiteProfiles Protein kinase domain profile. 368 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g1575 608 TIGRFAM TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 25 298 IPR001852 GO:0042819|GO:0042823
Lele15g1575 608 Gene3D Aldolase class I 15 308 IPR013785 -
Lele15g1575 608 Gene3D Phosphorylase Kinase; domain 1 371 448 - -
Lele15g1575 608 CDD pdxS 27 305 IPR001852 GO:0042819|GO:0042823
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1575 Lele-ChrLele15 9347674 9353849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1575 475 529 Receptor kinase-like Gene Family AT1G53420 52.727 1.68e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele15g1575 SOR_SNZ 2.1e-111 CL0036