Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1570 ATGGATTTCCAAAGCCAATCATTGTCAGTTTCACCGCAGAGGAAGACAGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACAAATCGCCAAGTCACTTTCTGCAAACGCAGAAATGGACTCCTCAAGAAGGCCTATGAACTATCTGTTCTCTGTGATGCTGAAGTCGCTTTAATCGTCTTCTCAACCCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTACAAGAAAGCATGTTCAGATTCTACTGGTGGATCTACTTCTGAAGTTAATGCACAGTACTATCAACAAGAATCCGCCAAACTGCGTGCCCAGATTAGTAACCTGCAGAATCACAACAGGCAAATGATGGGAGAGGGTTTGGGCAATCTGAACTCCAAGGATCTCAAAAACCTGGAGGGTAGGTTAGAAAGAGGGATCAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTATTTGCAGAAATTGAATACATGCAGAAGAGGGAAATAGAGTTGCATAACAACAATCAACTTCTTCGAGCAAAGATCGCTGAAAGTGAGAGGAACCAGCAGCAAAACATGAATGTATTGGGAGCAGGAGGGTCGTCGGAATATGAATCCATGCAATCGCAGCAGCAATTTGACAATAGAGGCTACTTTCAAGTCTCTGCATTACAACCCAATCATCAGTATTCACGCCAAGACCACATGGCCCTCCAATTAGTCTGA 735 0.4354 MDFQSQSLSVSPQRKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIDRYKKACSDSTGGSTSEVNAQYYQQESAKLRAQISNLQNHNRQMMGEGLGNLNSKDLKNLEGRLERGISRIRSKKNELLFAEIEYMQKREIELHNNNQLLRAKIAESERNQQQNMNVLGAGGSSEYESMQSQQQFDNRGYFQVSALQPNHQYSRQDHMALQLV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1570 244 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Lele15g1570 244 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Lele15g1570 244 Gene3D - 28 120 IPR036879 GO:0003677|GO:0046983
Lele15g1570 244 Pfam K-box region 98 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele15g1570 244 Coils Coil 101 128 - -
Lele15g1570 244 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lele15g1570 244 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Lele15g1570 244 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lele15g1570 244 Coils Coil 138 158 - -
Lele15g1570 244 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lele15g1570 244 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lele15g1570 244 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele15g1570 244 FunFam agamous-like MADS-box protein AGL11 28 110 - -
Lele15g1570 244 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Lele15g1570 244 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g1570 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Lele15g1570 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1570 Lele-ChrLele15 9300904 9306859 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1570 14 244 MADS-box Gene Family AT3G58780 68.776 8.40e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele15g1570 K-box 3.5e-27 No_clan