Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1567 ATGGATTTCCAAAGCCAATCATTGTCAGTTTCACCGCAGAGGAAGACAGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACAAATCGCCAAGTCACTTTCTGCAAACGCAGAAATGGACTCCTCAAGAAGGCCTATGAACTATCTGTTCTCTGTGATGCTGAAGTCGCTTTAATCGTCTTCTCAACCCGTGGTCGCCTCTATGAATATGCTAATAACAGATCTGATGCAATAGATAGAAATAGAAGCACTATGGGGGTTGTAAGCAGCAATATAGCTTTCAGTGTCAAAGCAACTATTGATAGGTACAAGAAAGCATGTTCAGATTCTACTGGTGGATCTACTTCTGAAGTTAATGCACAGTACTATCAACAAGAATCCGCCAAACTGCGTGCCCAGATTAGTAACCTGCAGAATCACAACAGGCAAATGATGGGAGAGGGTTTGGGCAATCTGAACTCCAAGGATCTCAAAAACCTGGAGGGTAGGTTAGAAAGAGGGATCAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTATTTGCAGAAATTGAATACATGCAGAAGAGGGAAATAGAGTTGCATAACAACAATCAACTTCTTCGAGCAAAGATCGCTGAAAGTGAGAGGAACCAGCAGCAAAACATGAATGTATTGGGAGCAGGAGGGTCGTCGGAATATGAATCCATGCAATCGCAGCAGCAATTTGACAATAGAGGCTACTTTCAAGTCTCTGCATTACAACCCAATCATCAGTATTCACGCCAAGACCACATGGCCCTCCAATTAGTGTATGTTTTCTTCATTACTTATACTTTCTATATATTCCCTTTGCTTCTTTATTTGTGGTGA 855 0.4199 MDFQSQSLSVSPQRKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNRSDAIDRNRSTMGVVSSNIAFSVKATIDRYKKACSDSTGGSTSEVNAQYYQQESAKLRAQISNLQNHNRQMMGEGLGNLNSKDLKNLEGRLERGISRIRSKKNELLFAEIEYMQKREIELHNNNQLLRAKIAESERNQQQNMNVLGAGGSSEYESMQSQQQFDNRGYFQVSALQPNHQYSRQDHMALQLVYVFFITYTFYIFPLLLYLW 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1567 284 Coils Coil 122 149 - -
Lele15g1567 284 FunFam MADS-box transcription factor 21 28 94 - -
Lele15g1567 284 Gene3D - 28 92 IPR036879 GO:0003677|GO:0046983
Lele15g1567 284 Coils Coil 159 179 - -
Lele15g1567 284 SUPERFAMILY SRF-like 17 79 IPR036879 GO:0003677|GO:0046983
Lele15g1567 284 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lele15g1567 284 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Lele15g1567 284 ProSiteProfiles K-box domain profile. 122 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele15g1567 284 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Lele15g1567 284 CDD MADS_MEF2_like 17 112 IPR033896 GO:0000977|GO:0045944
Lele15g1567 284 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lele15g1567 284 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Lele15g1567 284 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lele15g1567 284 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g1567 284 Pfam K-box region 119 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele15g1567 284 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 218 - -
Lele15g1567 284 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1567 Lele-ChrLele15 9268094 9273613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1567 14 265 MADS-box Gene Family AT3G58780 63.178 9.78e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele15g1567 K-box 4.9e-27 No_clan