Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1541 ATGAAGGGTTTGCTGATTTTGTGTTCTCGTTTCCAGAAGGGCGATGCAATGAAGCAGTCTTTCGACATTTCGGCTTCTGGTCCAACCAAGATTCCATCTATAAATATTCCCAAAGAAGTGGGACGCCATGCTTGGGAGGTTTTATCTGGATCTGATGCCTACCATGCTTCATCGGATGCTAGTCTTTTTTCTAGCTCGTTACCTGTTTTGCCACATGAAAAGTTGAACTTGAACGACACCAAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGTTTTAAAAAGCTCCACCAAGAGTTAGAGTTTAATGAATCACTTGAAGATGCAAATATTCATGCACTTGGAACAACGCTTCCAGATGATGAGGATGAGCTTTTAGCTGGCATAACAGATGATTTTGACCTGACTGGTTTGCCTGGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTTGGGGGTGGAGGTATGGAACTGGAAAATGATCCTCAGGAAAGTCTTACAGTGGGGATTTCAAAATTAAGTTTCTCTGATGGTACAATTGGCAATGGTTTGCCCCATTTCTCTTTTCCTAATGGTGTTGGAACTGTTGCTGGGGAACATCCGTATGGGGAACATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTAGAGGATTCAGAATTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCACTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAATCAAGGAACCTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTTAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTGTTGAATTTTATGATGTCAGAGCTGCGGAAGCGGCACTTAAATCATTGAACAGGAGTGACATAGCGGGTAAACGTATAAAGCTGGAACCTAGTCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGATCTTGATCAAGATGAATCTCGGAATTTTCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTCTAACAGCCCCATTGAACATAAGCCAATGCAATCTATCAGTAATTCTCCTGGTTCTAGGATTATGAGCCCAACAACTGGCAACCATTTACCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTATAAAGGGTGCAGCTATTGGTAAGGACCTAGGAAGGAGTAGTCATGGAGATCACGTGTTTAGTAGTACCAGTTCATCACATGGAGCCATATTTCAATCTCACTCACTTCCAGAACCAAAATTGGGCCAATATCGTGGAACTTTGTCCTCTTTTGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACTAAACCTTCACGTTGGCCTAGACCATCTGTATGGCCTCCATTCACATCGAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGCTCCTTTGTTGGATCTTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTTCTTCCTGAATCTCCTGAAACCTCATTTATTAATCATGTTGGTTATGGAGGCTTAAATGTGGGACACAATGATGGAAACTACATGATTAACATGGGTGGATCTGTTCATGCTGGCATTACTATGCCGAGGAATGTGTCTGAAAATGTTCAATCAAATTTCAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGTAATGGTCCTTATTCTGGGCTGCCGCCCACTGCCCTGGACGGTTTGACTGACCGTGGAAGGAGTAGACGGCTAGAGAATAATGGTAACCAAGTTGATAGCAAAAAGCAATTTGTGCTTGACTTGGATAAGATTAGAAGTGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGCTACTAGTTGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTCTCTCATCATTCCATTCTACGAGACATTCAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCGTATGCCCGAATCCAAGGAAAGGTTGCCCTTGTGAGCCACTTCCAGAATTCAAGTTTGATGAATGAAGACAAGCGATGCCGCCCTATTCTCTTCCACTCAGAGGGTCCTGAAGCCGGTGATCAGATCGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAGGTCCTCAGGCCAAATGATTCACATATGAATGACTCTCCTGGAAGCCCCCCCAATGATAACCCTCCTGTGAACTTGGAGACAAGGGTTGATATTTTGAGGGTTGGCAAGTTGACTTTGGGGGGGGGGGGTTACAAATTGTATAGAGGGAGGTAA 2691 0.4281 MKGLLILCSRFQKGDAMKQSFDISASGPTKIPSINIPKEVGRHAWEVLSGSDAYHASSDASLFSSSLPVLPHEKLNLNDTKNEYQSVDDISSGFKKLHQELEFNESLEDANIHALGTTLPDDEDELLAGITDDFDLTGLPGSLEDLEDYDLFGGGGMELENDPQESLTVGISKLSFSDGTIGNGLPHFSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESRNFRHQVGSPVANSPPGNWLQSNSPIEHKPMQSISNSPGSRIMSPTTGNHLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDHVFSSTSSSHGAIFQSHSLPEPKLGQYRGTLSSFGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSRWPRPSVWPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESPETSFINHVGYGGLNVGHNDGNYMINMGGSVHAGITMPRNVSENVQSNFRMRSSPRLSPVFLGNGPYSGLPPTALDGLTDRGRSRRLENNGNQVDSKKQFVLDLDKIRSGEDARTTLMIKNIPNKYTSKMLLVAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKVALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQVLRPNDSHMNDSPGSPPNDNPPVNLETRVDILRVGKLTLGGGGYKLYRGR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1541 896 PANTHER RNA RECOGNITION MOTIF-CONTAINING 58 840 - -
Lele15g1541 896 SUPERFAMILY RNA-binding domain, RBD 206 369 IPR035979 GO:0003676
Lele15g1541 896 Pfam RNA recognition motif 2 710 806 IPR007201 -
Lele15g1541 896 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 361 IPR000504 GO:0003723
Lele15g1541 896 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 275 IPR000504 GO:0003723
Lele15g1541 896 CDD RRM2_MEI2_like 293 363 - -
Lele15g1541 896 CDD RRM3_MEI2_like 713 798 IPR034454 -
Lele15g1541 896 Gene3D - 293 390 IPR012677 -
Lele15g1541 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 367 IPR000504 GO:0003723
Lele15g1541 896 MobiDBLite consensus disorder prediction 849 870 - -
Lele15g1541 896 FunFam Protein MEI2-like 1 293 388 - -
Lele15g1541 896 SMART rrm1_1 210 278 IPR000504 GO:0003723
Lele15g1541 896 SMART rrm1_1 712 788 IPR000504 GO:0003723
Lele15g1541 896 SMART rrm1_1 295 363 IPR000504 GO:0003723
Lele15g1541 896 Gene3D - 198 292 IPR012677 -
Lele15g1541 896 CDD RRM1_MEI2_like 208 284 IPR034453 -
Lele15g1541 896 SUPERFAMILY RNA-binding domain, RBD 712 796 IPR035979 GO:0003676
Lele15g1541 896 MobiDBLite consensus disorder prediction 667 686 - -
Lele15g1541 896 FunFam MEI2-like protein 5 isoform 2 198 292 - -
Lele15g1541 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1541 Lele-ChrLele15 9124169 9131403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1541 204 372 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 3.20e-06 48.9