Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1523 ATGGGTCGTCGGAAGATCAAGATGGAGAGGGTGAAGGACGCGGCGTCGAGATTGGTGACTTTCTCAAAGCGCCGGAACGGACTCTTCAAGAAAGCGAACGAGCTAGCAATCTTGTGCGGCGCCGAACTCGCCATTGTCGTGTTCTCGCCTGGTGGCAAGCCATTCTCCTTCGGCCACCCTTCTGTCAACGCCGTGACTGAGAGGTTTCTACGGCAACTCCAAAACGAGGACGACGACGGGGACGATGACGATGAGGAAGAGGAAAAATCGCCGGCAGGCGGGACCTCGAAGAAAGCTTATCGAAAAGCGGAGAAACTGAACCAGCGGCTGATGAATCTGATGAAGGAGCTGGAGGAAGAGAAGAAAAAGGGGGCGATGCTGGACAAGGCGATCGAGGAGAACAAGATCAAGTATGGGCTGGGGCCTGAGGCTGTTCCCGATGATCTGAGCAAGCTTGAGGGATTGAAGCGATCGCTGGAGAAACTTAGGGAAGACGTGAAGCTGCGGAAGAGAGAAGTGGAGGCTGCGTCGTCGTTGCTAGTACTTGCAGAGAAATTACAGTTGAAGGAAGACGAGAATGTTGCTGAAAGTGAAGAAGATGATGGCGGTGAGATCAGAAATGGAAAGTAA 630 0.5302 MGRRKIKMERVKDAASRLVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVNAVTERFLRQLQNEDDDGDDDDEEEEKSPAGGTSKKAYRKAEKLNQRLMNLMKELEEEKKKGAMLDKAIEENKIKYGLGPEAVPDDLSKLEGLKRSLEKLREDVKLRKREVEAASSLLVLAEKLQLKEDENVAESEEDDGGEIRNGK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1523 209 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Lele15g1523 209 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Lele15g1523 209 Coils Coil 96 127 - -
Lele15g1523 209 PANTHER MADS BOX PROTEIN 3 167 - -
Lele15g1523 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele15g1523 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele15g1523 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele15g1523 209 Coils Coil 149 179 - -
Lele15g1523 209 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Lele15g1523 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele15g1523 209 MobiDBLite consensus disorder prediction 75 101 - -
Lele15g1523 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele15g1523 209 MobiDBLite consensus disorder prediction 190 209 - -
Lele15g1523 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele15g1523 209 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1523 Lele-ChrLele15 9016599 9017228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1523 1 124 Type I MADS-box Gene Family AT2G34440 56.800 2.94e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele15g1523 SRF-TF 2.4e-23 No_clan