Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1517 ATGAAATTATGGGCCACTAACGAGGTTCGCGCCAAGTCGAAGTTCTGGTATTTTCTGAGGAAACTGAAGAAGGTCAAAAAGAGCAACGGTCAAGTGCTTGCTATCAATGAGATCTTTGAGAAGAACCCAACGACGATAAAGAACTATGGTATTTGGCTGCGGTATCAAAGCAGGACTGGCTACCACAACATGTACAAGGAATACCGTGATACCACTCTAAATGGTGCGGTTGAGTCCATGTACACTGAGATGGCTTCCCGCCACAGGGTCCGGTTCCCCTGCATTCAAATTATTAAGACGGCCACGATCCCAGCAAAGCTTTGCAAAAGGGAGAGCAGCAAACAGTTCCACAACTCCAAAATGAAGTTCCCATTGGTTTACAAGAAGGTCAGGCCACCCACAAGAAAGCTCAAGACCACCTTCAAGGCATCAAGGCCCAATTTGCCAATCTTCATTTTTATCATTTCATGTTATGTTTCTGCTCTTCCTTTCACTGAGTGTTCATTCCTTAAGGAGGTGACTCAATCTGGCAGCCACAAGAGCTCAAATCACAAAATCAACAAGATCAATTCTCAGAAGTCATCGGATATAGCACTTCATGGATTGCTGCTGTGGGCTTCGATGGGATTCTCAATGCCATTAGGGATACTTACTATCAGAATGTCAAGTAAAGAGGGAAATGGATCAAGGAATAGGGTCCTCTTTTATGTCCATGTTGCATTTCAGATGCTCTCAGTGCTTCTTGCTACAGTTGGAGCTGTCATGTCCCTGAAGAACTTTGAGAATTCATTTGATAACAACCATCAAAGAATAGGTCTTGCACTTTATGGCAAAAGAAAGAGAGGACTTATTGACAAAATGGAGTACATAAAAAAGCAAAGGGTGATTCCAGGCACAGAGTCAACTGTTCCTTCTCAACAAGACATTCCTCATTTGCAGAACCAGAATGAGTTATTACCAGTAGTAGCATGTGGGAAGAAAAATGCACTTAGCAACTTGTTTGACCAATAA 1011 0.4273 MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVESMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKMKFPLVYKKVRPPTRKLKTTFKASRPNLPIFIFIISCYVSALPFTECSFLKEVTQSGSHKSSNHKINKINSQKSSDIALHGLLLWASMGFSMPLGILTIRMSSKEGNGSRNRVLFYVHVAFQMLSVLLATVGAVMSLKNFENSFDNNHQRIGLALYGKRKRGLIDKMEYIKKQRVIPGTESTVPSQQDIPHLQNQNELLPVVACGKKNALSNLFDQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1517 336 FunFam 60S ribosomal protein L18a 44 119 - -
Lele15g1517 336 Gene3D - 1 42 - -
Lele15g1517 336 Gene3D - 43 115 - -
Lele15g1517 336 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 1 100 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele15g1517 336 Gene3D - 150 277 - -
Lele15g1517 336 SUPERFAMILY RplX-like 43 118 - -
Lele15g1517 336 CDD Cyt_b561_FRRS1_like 175 277 - -
Lele15g1517 336 Hamap 50S ribosomal protein L18Ae [rpl18a]. 1 41 IPR028877 -
Lele15g1517 336 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 149 IPR028877 -
Lele15g1517 336 SMART 561_7 199 283 IPR006593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1517 Lele-ChrLele15 8984420 8988913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1517 1 148 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.216 1.32e-100 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0216 21 1425481 1427805 Lele15g1517 15 8984420 8988913 CCT
Lele22g0224 22 1354609 1356838 Lele15g1517 15 8984420 8988913 CCT
Lele23g1838 23 21736430 21739389 Lele15g1517 15 8984420 8988913 CCT
Lele24g0212 24 1367853 1370002 Lele15g1517 15 8984420 8988913 CCT